PCV3 strains | Group | Subgroup |
---|---|---|
CN/Xinjiang-SH6/2018 | 1 | 1.1 |
CN/Xinjiang-TA36/2018 | 1 | 1.1 |
CN/Xinjiang-AL5/2018 | 1 | 1.2 |
CN/Xinjiang-UR22/2018 | 1 | 1.1 |
CN/Xinjiang-YI7/2018 | 2 | 2.1 |
CN/Xinjiang-CH29/2018 | 2 | 2.2 |
CN/Xinjiang-AK16/2018 | 2 | 2.1 |
CN/Xinjiang-KO17/2018 | 2 | 2.2 |
CN/Xinjiang-KA2/2018 | 1 | 1.1 |
Primer name | Nucleotide sequence | Position in reference | Product size |
---|---|---|---|
(5′→ 3′) | sequence | (bp) | |
FP1 | CCGTAGAAGTCTGTCATTCCAG | 1383–1404 | |
RP1 | AAGCCCTGGCACGCCAACCAC | 1796–1816 | 434 |
FP2 | TTAGAGAACGGACTTGTAACGA | 1343–1364 | |
RP2 | ATGAGACACAGAGCTATATTCAG | 1965–1987 | 645 |
Strain | Accession number |
---|---|
2164 | KX458235 |
PCV3-US/MN2016 | KX898030 |
PCV3-US/SD2016 | KX966193 |
PCV3/CN/Fujian-5/2016 | KY075986 |
PCV3/CN/Henan-13/2016 | KY075988 |
PCV3/CN/Jiangxi-62/2016 | KY075989 |
PCV3/CN/Chongqing-150/2016 | KY075992 |
CN/Hubei-618/2016 | KY354039 |
CCV-A | KY363870 |
CCV-B | KY363871 |
CCV-C | KY363872 |
PCV3-China/GD2016 | KY418606 |
PCV3/KU-1601 | KY996337 |
PCV3/KU-1604 | KY996340 |
PCV3/KU-1606 | KY996342 |
PCV3/KU-1608 | KY996344 |
PCV3/KU-1609 | KY996345 |
P1705SCYC/2017 | MF063070 |
16R927/2016 | MF063071 |
PCV3-BR/RS/6 | MF079253 |
PCV3/CN/Jiangxi-B1/2017 | MF589107 |
PCV3/CN/Jiangxi-S1/2017 | MF589133 |
PCV3/CN/Guangdong-CH/2016 | MF589112 |
PCV3/CN/Guangdong-X1/2016 | MF589118 |
309 | MF589652 |
JX-1/CH/2017 | MF677838 |
1621_Italy_2017 | MF805719 |
4332-5_Denmark_2017 | MF805723 |
4332-7_Denmark_2017 | MF805724 |
DE2.8 | MG014377 |
DE19.15 | MG014367 |
DE27.16 | MG014370 |
PCV3/HU/Szerencs/2017 | MG595741 |
PCV3-RU/TY17 | MG679916 |
PCV3-JSXY-201701 | MG868940 |
PCV3-HBWH-201703 | MG868941 |
PCV3-SH-201705 | MG868945 |
SD | MG947596 |
PCV3-CN2018HLG-5 | MH277111 |
PCV3-CN2018JL-1 | MH277112 |
PCV3-CN2018LN-3 | MH277117 |
COL/Cundinamarca2/2018 | MH327785 |
CN/Xinjiang-AK16/2018 | MK562412 |
CN/Xinjiang-AL5/2018 | MK562413 |
CN/Xinjiang-CH29/2018 | MK562414 |
CN/Xinjiang-KA2/2018 | MK562415 |
CN/Xinjiang-KO17/2018 | MK562416 |
CN/Xinjiang-SH6/2018 | MK562417 |
CN/Xinjiang-TA36/2018 | MK562418 |
CN/Xinjiang-UR22/2018 | MK562419 |
CN/Xinjiang-YI7/2018 | MK562420 |
29160 | NC031753 |
Clinical samples | Number of samples | Number of positive samples | Positive rate (%) of PCV3 |
---|---|---|---|
Lymph nodes | 79 | 29 | 36.71 (29/79) a |
Spleen | 93 | 22 | 23.66 (22/93) a |
Lung | 62 | 9 | 14.52 (9/62) b |
Pleural effusion | 57 | 13 | 22.81 (13/57) a |
Serum | 102 | 15 | 14.71 (15/102) b |
Total | 393 | 88 | 22.39 (88/393) |