<abstract xmlns="http://www.w3.org/1999/xhtml"><p>Parkinson’s Disease can be treated with the use of microelectrode recording and stimulation. This paper presents a data stream classifier that analyses raw data from micro-electrodes and decides whether the measurements were taken from the subthalamic nucleus (STN) or not. The novelty of the proposed approach is based on the fact that distances based on raw data are used. Two distances are investigated in this paper, i.e. Normalized Compression Distance (NCD) and Lempel-Ziv Jaccard Distance (LZJD). No new features needed to be extracted due to the fact that in the case of high-dimensional data the process is extremely time-consuming. The k-nearest neighbour (k-NN) was chosen as the classifier due to its simplicity, which is essential in data stream classification. Results obtained from classifiers based on k-NN: k-NN, k-NN were compared with Probabilistic Approximate Window (k-NN with PAW); k-NN with Probabilistic Approximate Window and Adaptive Windowing (k-NN with PAW and ADWIN); and Self Adjusting Memory k-NN (SAM k-NN), which use the proposed distances, with the performance of the same classifiers but using standard Euclidean distance. Prequential accuracy was chosen as the performance measure. The results of the experiments performed with the described approach are in most cases better, i.e. the performance measures for kNN classifiers that use NCD and LZJD distances are better by up to 8.5 per cent and 14 per cent, respectively. Moreover, the proposed approach performs better when compared with other stream classification algorithms, i.e. Hoeffding Tree, Naive Bayes, and Leveraging Bagging. In the discussed case, an improvement of classification rate of up to 17.9 per cent when using Lempel-Ziv Jaccard Distance instead of the Euclidean was noted.</p></abstract>

Parkinson’s Disease can be treated with the use of microelectrode recording and stimulation. This paper presents a data stream classifier that analyses raw data from micro-electrodes and decides whether the measurements were taken from the subthalamic nucleus (STN) or not. The novelty of the proposed approach is based on the fact that distances based on raw data are used. Two distances are investigated in this paper, i.e. Normalized Compression Distance (NCD) and Lempel-Ziv Jaccard Distance (LZJD). No new features needed to be extracted due to the fact that in the case of high-dimensional data the process is extremely time-consuming. The k-nearest neighbour (k-NN) was chosen as the classifier due to its simplicity, which is essential in data stream classification. Results obtained from classifiers based on k-NN: k-NN, k-NN were compared with Probabilistic Approximate Window (k-NN with PAW); k-NN with Probabilistic Approximate Window and Adaptive Windowing (k-NN with PAW and ADWIN); and Self Adjusting Memory k-NN (SAM k-NN), which use the proposed distances, with the performance of the same classifiers but using standard Euclidean distance. Prequential accuracy was chosen as the performance measure. The results of the experiments performed with the described approach are in most cases better, i.e. the performance measures for kNN classifiers that use NCD and LZJD distances are better by up to 8.5 per cent and 14 per cent, respectively. Moreover, the proposed approach performs better when compared with other stream classification algorithms, i.e. Hoeffding Tree, Naive Bayes, and Leveraging Bagging. In the discussed case, an improvement of classification rate of up to 17.9 per cent when using Lempel-Ziv Jaccard Distance instead of the Euclidean was noted.

Application of Normalized Compression Distance and Lempel-Ziv Jaccard Distance in Micro-electrode Signal Stream Classification for the Surgical Treatment of Parkinson’s Disease

Faculty of Economics and Informatics in Vilnius

Studies in Logic, Grammar and Rhetoric

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

Parkinson’s Disease can be treated with the use of microelectrode recording and stimulation. This paper presents a data stream classifier that analyses raw...

Application of Normalized Compression Distance and Lempel-Ziv Jaccard Distance in Micro-electrode Signal Stream Classification for the Surgical Treatment of Parkinson’s Disease

Published Online: Mar 16, 2019

Page range: 45 - 57

DOI: https://doi.org/10.2478/slgr-2018-0040

© 2018 Kamil Ząbkiewicz, published by Sciendo

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.