Microarray Analysis of Gene Expression in Triploid Black Poplar

ANDORF, S., J. SELBIG, T. ALTMANN, K. POOS, H. WITUCKAWALL and D. REPSILBER (2010): Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis. Theor Appl Genet 120 (2): 249-259.Search in Google Scholar

AINSWORTH, E. A. and D. R. BUSH (2011): Carbohydrate export from the leaf: a highly regulated process and target to enhance photosynthesis and productivity. Plant Physiol 155: 64-69.10.1104/pp.110.167684307578720971857Search in Google Scholar

ANDERSSON-GUNNERAS, S., E. J. MELLEROWICZ, J. LOVE, B. SEGERMAN, Y. OHMIYA, P. M. COUTINHO, P. NILSSON, B. HENRISSAT, T. MORITZ and B. SUNDBERG (2006): Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. Plant J 45: 144-165.10.1111/j.1365-313X.2005.02584.x16367961Search in Google Scholar

AYRE, B. G. (2011): Membrane-Transport Systems for Sucrose in Relation to Whole-Plant Carbon Partitioning. Mol Plant. doi: 10.1093/mp/ssr014.Search in Google Scholar

BANCOS, S., T. NOMURA, T. SATO, G. MOLNAR, G. J. BISHOP, C. KONCZ, T. YOKOTA, F. NAGY and M. SZEKERES (2002): Regulation of transcript levels of the Arabidopsis cytochrome p450 genes involved in brassinosteroid biosynthesis. Plant Physiol 130: 504-513.10.1104/pp.00543916658212226529Search in Google Scholar

BAO, F., J. SHEN, S. R. BRADY, G. K. MUDAY, T. ASAMI and Z. YANG (2004): Brassinosteroids interact with auxin to promote lateral root development in Arabidopsis. Plant Physiol 134: 1624-1631.10.1104/pp.103.03689741983615047895Search in Google Scholar

BLANC, G. and K. H. WOLFE (2004): Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678.10.1105/tpc.02134551415215208399Search in Google Scholar

BRADSHAW, H. D. and R. F. STETTLER (1993): Molecular genetics of growth and development in Populus. I. Triploidy in hybrid poplars. TAG Theoretical and Applied Genetics 86: 301-307.10.1007/BF0022209224193473Search in Google Scholar

CHEN, Z. J. (2010): Molecular mechanisms of polyploidy and hybrid vigor. Trends Plant Sci 15: 57-71.10.1016/j.tplants.2009.12.003282198520080432Search in Google Scholar

CUI, L., P. K. WALL, J. H. LEEBENS-MACK, B. G. LINDSAY, D. E. SOLTIS, J. J. DOYLE, P. S. SOLTIS, J. E. CARLSON, K. ARUMUGANATHAN, A. BARAKAT, V. A. ALBERT, H. MA, and C. W. DEPAMPHILIS (2006): Widespread genome duplications throughout the history of flowering plants. Genome Res 16: 738-749.10.1101/gr.4825606147985916702410Search in Google Scholar

DE GRAUWE, L., F. VANDENBUSSCHE, O. TIETZ, K. PALME, and D. VAN DER STRAETEN (2005): Auxin, ethylene and brassinosteroids: tripartite control of growth in the Arabidopsis hypocotyl. Plant Cell Physiol 46: 827-836.10.1093/pcp/pci11115851402Search in Google Scholar

DU, Z., X. ZHOU, Y. LING, Z. ZHANG and Z. SU (2010): agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 38: W64-70.10.1093/nar/gkq310289616720435677Search in Google Scholar

DUNN, M. F., D. NIKS, H. NGO, T. R. BARENDS, and I. SCHLICHTING (2008): Tryptophan synthase: the workings of a channeling nanomachine. Trends Biochem Sci 33: 254-264.10.1016/j.tibs.2008.04.00818486479Search in Google Scholar

FLAGEL, L., J. UDALL, D. NETTLETON and J. WENDEL (2008): Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution. BMC Biol 6: 16.10.1186/1741-7007-6-16233014118416842Search in Google Scholar

HALLIDAY, K. J. (2004): Plant hormones: the interplay of brassinosteroids and auxin. Curr Biol 14: R1008-1010.10.1016/j.cub.2004.11.02515589137Search in Google Scholar

HANCOCK, J. E., W. M. LOYA, C. P. GIARDINA, L. LI, V. L. CHIANG and K. S. PREGITZER (2007): Plant growth, biomass partitioning and soil carbon formation in response to altered lignin biosynthesis in Populus tremuloides. New Phytol 173: 732-742.10.1111/j.1469-8137.2006.01965.x17286822Search in Google Scholar

HEGARTY, M. J., G. L. BARKER, I. D. WILSON, R. J. ABBOTT, K. J. EDWARDS and S. J. HISCOCK (2006): Transcriptome shock after interspecific hybridization in senecio is ameliorated by genome duplication. Curr Biol 16 (16): 1652-1659.10.1016/j.cub.2006.06.07116920628Search in Google Scholar

HUANG, W., B. T. SHERMAN and R. A. LEMPICKI (2009): Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37: 1-13.10.1093/nar/gkn923261562919033363Search in Google Scholar

HUNTLEY, S. K., D. ELLIS, M. GILBERT, C. CHAPPLE and S. D. MANSFIELD (2003): Significant increases in pulping efficiency in C4H-F5H-transformed poplars: improved chemical savings and reduced environmental toxins. J Agric Food Chem 51: 6178-6183. 10.1021/jf034320o14518941Search in Google Scholar

JACKSON, S. and Z. J. CHEN (2010): Genomic and expression plasticity of polyploidy. Curr Opin Plant Biol 13: 153-159.10.1016/j.pbi.2009.11.004288057120031477Search in Google Scholar

KIEFER, E., W. HELLER and D. ERNST (2000): A simple and efficient protocol for isolation of functional RNA from plant tissues rich in secondary metabolites. Plant Mol Bio Rep 18: 33-39.10.1007/BF02825291Search in Google Scholar

KOHLER, C., O. MITTELSTEN SCHEID and A. ERILOVA (2010): The impact of the triploid block on the origin and evolution of polyploid plants. Trends Genet 26: 142-148.10.1016/j.tig.2009.12.00620089326Search in Google Scholar

LI, L., J. XU, Z. H. XU and H. W. Xue (2005): Brassinosteroids stimulate plant tropisms through modulation of polar auxin transport in Brassica and Arabidopsis. Plant Cell 17: 2738-2753.10.1105/tpc.105.034397124226916141452Search in Google Scholar

LI, Y. H., X. Y. KANG, S. D. WANG, Z. H. ZHANG and H. W. CHEN (2008): Triploid Induction in Populus alba x P. glandulosa by Chromosome Doubling of Female Gametes. Silvae Genetica 57: 37-40.10.1515/sg-2008-0006Search in Google Scholar

LIESCHE, J., U. KRUGEL, H. HE, I. CHINCINSKA, A. HACKEL and C. KUHN (2011): Sucrose transporter regulation at the transcriptional, post-transcriptional and post-translational level. J Plant Physiol 168 (12): 1426-33.10.1016/j.jplph.2011.02.00521444123Search in Google Scholar

LLOYD, J. R., J. KOSSMANN and G. RITTE (2005.): Leaf starch degradation comes out of the shadows. Trends Plant Sci 10: 130-137.10.1016/j.tplants.2005.01.00115749471Search in Google Scholar

MASTERSON, J. (1994): Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms. Science 264: 421-424.10.1126/science.264.5157.42117836906Search in Google Scholar

MCCASKILL, A. and R. TURGEON (2007): Phloem loading in Verbascum phoeniceum L. depends on the synthesis of raffinose-family oligosaccharides. Proc Natl Acad Sci USA 104: 19619-19624.10.1073/pnas.0707368104214833818048337Search in Google Scholar

MURPHY, A. S., K. R. HOOGNER, W. A. PEER and L. TAIZ (2002): Identification, purification, and molecular cloning of N-1-naphthylphthalmic acid-binding plasma membrane-associated aminopeptidases from Arabidopsis. Plant Physiol 128: 935-950.10.1104/pp.01051915220611891249Search in Google Scholar

PAULEY, S. (1949): Forest-tree genetics research: Populus L. Econ Bot 3: 299-330.10.1007/BF02859100Search in Google Scholar

PUMPHREY, M., J. BAI, D. LAUDENCIA-CHINGCUANCO, O. ANDERSON and B. S. GILL (2009): Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat. Genetics 181 (3): 1147-1157.10.1534/genetics.108.096941265104919104075Search in Google Scholar

RIDDLE, N. C. and J. A. BIRCHLER (2003): Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids. Trends Genet 19 (11): 597-600.10.1016/j.tig.2003.09.00514585608Search in Google Scholar

RIESEBERG, L. H. and J. H. WILLIS (2007): Plant speciation. Science 317: 910-914.10.1126/science.1137729244292017702935Search in Google Scholar

SCHRICK, K., S. FUJIOKA, S. TAKATSUTO, Y. D. STIERHOF, H. STRANSKY, S. YOSHIDA and G. JURGENS (2004): A link between sterol biosynthesis, the cell wall, and cellulose in Arabidopsis. Plant J 38: 227-243.10.1111/j.1365-313X.2004.02039.x15078327Search in Google Scholar

SMITH, A. M., S. C. ZEEMAN and S. M. SMITH (2005): Starch degradation. Annu Rev Plant Biol 56: 73-98.10.1146/annurev.arplant.56.032604.14425715862090Search in Google Scholar

TURGEON, R. and E. GOWAN (1990): Phloem Loading in Coleus blumei in the Absence of Carrier-Mediated Uptake of Export Sugar from the Apoplast. Plant Physiol 94: 1244-1249.10.1104/pp.94.3.1244107736916667824Search in Google Scholar

TURGEON, R. and D. U. BEEBE (1991): The Evidence for Symplastic Phloem Loading. Plant Physiol 96: 349-354. 10.1104/pp.96.2.349108077616668192Search in Google Scholar

van BUIJTENEN, J. P, P. N. JORANSON and E. DW. (1958): Diploid versus triploid aspen as pulpwood sources with reference to growth, chemical, physical, and pulping differences. TAPPI 41: 170-175.Search in Google Scholar

VOELKER, S. L., B. LACHENBRUCH, F. C. MEINZER and S. H. STRAUSS (2011a): Reduced wood stiffness and strength, and altered stem form, in young antisense 4CL transgenic poplars with reduced lignin contents. New Phytol 189: 1096-1109.10.1111/j.1469-8137.2010.03572.x21158867Search in Google Scholar

VOELKER, S. L., B. LACHENBRUCH, F. C. MEINZER, P. KITIN and S. H. STRAUSS (2011b): Transgenic poplars with reduced lignin show impaired xylem conductivity, growth efficiency and survival. Plant Cell Environ 34: 655-668.10.1111/j.1365-3040.2010.02270.x21309794Search in Google Scholar

WANG, J., L. TIAN, H. S. LEE, N. E. WEI, H. JIANG, B. WATSON, A. MADLUNG, T. C. OSBORN, R. W. DOERGE, L. COMAI and Z. J. CHEN (2006): Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics 172: 507-517.10.1534/genetics.105.047894145617816172500Search in Google Scholar

WEI, T., A. NELSON and E. JOHNSON (2005): Increasing cellulose production and transgenic plant growth in forest tree species. J Forest Res 16: 67-72-72.10.1007/BF02856860Search in Google Scholar

WU, C. Y., A. TRIEU, P. RADHAKRISHNAN, S. F. KWOK, S. HARRIS, K. ZHANG, J. WANG, J. WAN, H. ZHAI, S. TAKATSUTO, S. MATSUMOTO, S. FUJIOKA, K. A. FELDMANN and R. I. PENNELL (2008): Brassinosteroids regulate grain filling in rice. Plant Cell 20: 2130-2145.10.1105/tpc.107.055087255360218708477Search in Google Scholar

WU, R. L. (2000): Quantitative genetic variation of leaf size and shape in a mixed diploid and triploid population of Populus. Genet Res 75: 215-222.10.1017/S001667239900427910816978Search in Google Scholar

XIA, X.-J., L.-F. HUANG, Y.-H. ZHOU, W.-H. MAO, K. SHI, J.-X. WU, T. ASAMI, Z. CHEN and J.-Q. YU (2009): Brassinosteroids promote photosynthesis and growth by enhancing activation of Rubisco and expression of pho- tosynthetic genes in Cucumis sativus Planta 230: 1185-1196-1196.10.1007/s00425-009-1016-119760261Search in Google Scholar

YAMAUCHI, A., A. HOSOKAWA, H. NAGATA and M. SHIMODA (2004): Triploid bridge and role of parthenogenesis in the evolution of autopolyploidy. Am Nat 164: 101-112.10.1086/42135615266374Search in Google Scholar

ZHANG, Q., Z. Y. ZHANG, S. Z. LIN and Y. Z. LIN (2005): Resistance of transgenic hybrid triplolds in Populus tomentosa Carr. against 3 species of lepidopterans following two winter dormancies conferred by high level expression of cowpea trypsin inhibitor gene. Silvae Genetica 54: 108-116.10.1515/sg-2005-0017Search in Google Scholar

ZHANG, Q., Z. Y. ZHANG, S. Z. LIN, H. Q. ZHENG, Y. Z. LIN, X. M. AN, Y. LI and H. X. LI (2008): Characterization of resistance gene analogs with a nucleotide binding site isolated from a triploid white poplar. Plant Biol (Stuttg) 10: 310-322.10.1111/j.1438-8677.2008.00029.x18426478Search in Google Scholar

ZHENG, H., S. LIN, Q. ZHANG, Y. LEI and Z. ZHANG (2009): Functional analysis of 5’ untranslated region of a TIRNBS- encoding gene from triploid white poplar. Mol Genet Genomics 282: 381-394.10.1007/s00438-009-0471-519618215Search in Google Scholar