Otwarty dostęp

Monitoring of Rhizosphere Bacterial Communities in Soil with Sewage Sludge Addition Using Two Molecular Fingerprinting Methods: Do These Methods Give Similar Results?


Zacytuj

ACOSTA-MARTÍNEZ, V. – DOWD, S. – SUN, Y. – ALLEN, V. 2008. Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use. In Soil Biology & Biochemistry, vol. 40, no. 11, pp. 2762–2770. 10.1016/j.soilbio.2008.07.022ACOSTA-MARTÍNEZV.DOWDS.SUNY.ALLENV.2008Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land useSoil Biology & Biochemistry40112762277010.1016/j.soilbio.2008.07.022Open DOISearch in Google Scholar

BAIS, H.P. – WEIR, T.L. – PERRY, L.G. – GILROY, S. – VIVANCO, J.M. 2006. The role of root exudates in rhizosphere interactions with plants and other organisms. In Annual Review of Plant Biology, vol. 57, pp. 233–266. 10.1146/annurev.arplant.57.032905.105159BAISH.P.WEIRT.L.PERRYL.G.GILROYS.VIVANCOJ.M.2006The role of root exudates in rhizosphere interactions with plants and other organismsAnnual Review of Plant Biology5723326610.1146/annurev.arplant.57.032905.10515916669762Open DOISearch in Google Scholar

BERG, G. – GRUBE, M. – SCHLOTER, M. – SMALLA, K. 2014. Unraveling the plant microbiome: looking back and future perspectives. In Frontiers in Microbiology, vol. 5, 2014, no. 148, pp. 1–7. 10.3389/FMICB.2014.00148BERGG.GRUBEM.SCHLOTERM.SMALLAK.2014Unraveling the plant microbiome: looking back and future perspectivesFrontiers in Microbiology520141481710.3389/FMICB.2014.00148404515224926286Open DOISearch in Google Scholar

BERG, G. – SMALLA, K. 2009. Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. In FEMS Microbiology Ecology, vol. 68, pp. 1–13. 10.1111/j.1574-6941.2009.00654.xBERGG.SMALLAK.2009Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphereFEMS Microbiology Ecology6811310.1111/j.1574-6941.2009.00654.x19243436Open DOISearch in Google Scholar

BUÉE, M. – DE BOER, W. – MARTIN, F. – VAN OVERBEEK, L. – JURKEVITCH, E. 2009. The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors. In Plant Soil, vol. 321, pp. 189–212. 10.1007/s11104-009-9991-3BUÉEM.DE BOERW.MARTINF.VAN OVERBEEKL.JURKEVITCHE.2009The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factorsPlant Soil32118921210.1007/s11104-009-9991-3Open DOISearch in Google Scholar

CARDINALE, M. – BRUSETTI, L. – QUATRINI, P. – BORIN, S. – PUGLIA, A.M. – RIZZI, A. – ZANARDINI, E. – SORLINI, C. – CORSELLI, C. – DAFFONCHIO, D. 2004. Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communities. In Applied Environmental Microbiology, vol. 70, no. 10, pp. 6147–6156. 10.1128/AEM.70.10.6147-6156.2004CARDINALEM.BRUSETTIL.QUATRINIP.BORINS.PUGLIAA.M.RIZZIA.ZANARDINIE.SORLINIC.CORSELLIC.DAFFONCHIOD.2004Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communitiesApplied Environmental Microbiology70106147615610.1128/AEM.70.10.6147-6156.200452205715466561Open DOISearch in Google Scholar

CAVAGLIERI, L. – ORLANDO, J. – ETCHEVERRY, M. 2009. Rhizosphere microbial community structure at different maize plant growth stages and root locations. In Microbiological Research, vol. 164, pp. 391–399. 10.1016/j.micres.2007.03.006CAVAGLIERIL.ORLANDOJ.ETCHEVERRYM.2009Rhizosphere microbial community structure at different maize plant growth stages and root locationsMicrobiological Research16439139910.1016/j.micres.2007.03.00617524636Open DOISearch in Google Scholar

DRENOVSKY, R.E. – STEENWERTH, K.L. – JACKSON, L.E. – SCOW, K.M. 2010. Land use and climatic factors structure regional patterns in soil microbial communities. In Global Ecology and Biogeography, vol. 19, no. 1, pp. 27–39. 10.1111/j.1466-8238.2009.00486.xDRENOVSKYR.E.STEENWERTHK.L.JACKSONL.E.SCOWK.M.2010Land use and climatic factors structure regional patterns in soil microbial communitiesGlobal Ecology and Biogeography191273910.1111/j.1466-8238.2009.00486.x389189624443643Open DOISearch in Google Scholar

HAMLEN, R.A. – LUKEZIE, F.L. – BLOOM, J.R. 1972. Influence of age and state of development of the neutral carbohydrates components in root exudates from alfalfa plants grown in a gnotobiotic environment. In Canadian Journal of Plant Science, vol. 52, no. 4, pp. 633–42. 10.4141/cjps72-097HAMLENR.A.LUKEZIEF.L.BLOOMJ.R.1972Influence of age and state of development of the neutral carbohydrates components in root exudates from alfalfa plants grown in a gnotobiotic environmentCanadian Journal of Plant Science5246334210.4141/cjps72-097Open DOISearch in Google Scholar

HERSCHKOVITZ, Y. – LERNER, A. – DAVIDOV, Y. – ROTHBALLER, M. – HARTMANN, A. – OKON, Y. – JURKEVITCH, E. 2005. Inoculation with the plant growth promoting rhizobacterium Azospirillum brasilense causes little disturbance in the rhizosphere and rhizoplane of maize (Zea mays). In Microbial Ecology, vol. 50, no. 2, pp. 277–288. 10.1007/s00248-004-0148-xHERSCHKOVITZY.LERNERA.DAVIDOVY.ROTHBALLERM.HARTMANNA.OKONY.JURKEVITCHE.2005Inoculation with the plant growth promoting rhizobacterium Azospirillum brasilense causes little disturbance in the rhizosphere and rhizoplane of maize (Zea mays)Microbial Ecology50227728810.1007/s00248-004-0148-x16211327Open DOISearch in Google Scholar

JOST, L. 2006. Entropy and diversity. In Oikos, vol. 113, no. 2, pp. 363–375. 10.1111/j.2006.0030-1299.14714.xJOSTL.2006Entropy and diversityOikos113236337510.1111/j.2006.0030-1299.14714.xOpen DOISearch in Google Scholar

LARGE, E.C. 1954. Growth stages in cereals, illustration of the feekes scale. In Plant Pathology, vol. 3, pp. 128–129. 10.1111/j.1365-3059.1954.tb00716.xLARGEE.C.1954Growth stages in cereals, illustration of the feekes scalePlant Pathology312812910.1111/j.1365-3059.1954.tb00716.xOpen DOISearch in Google Scholar

LAUBER, C.L. – STRICKLAND, M.S. – BRADFORD, M.A. – FIERER, N. 2008. The influence of soil properties on the structure of bacterial and fungal communities across land-use types. In Soil Biology & Biochemistry, vol. 40, no. 9, pp. 2407–2415. 10.1016/j.soilbio.2008.05.021LAUBERC.L.STRICKLANDM.S.BRADFORDM.A.FIERERN.2008The influence of soil properties on the structure of bacterial and fungal communities across land-use typesSoil Biology & Biochemistry4092407241510.1016/j.soilbio.2008.05.021Open DOISearch in Google Scholar

LERNER, A. – HERSCHKOVITZ, Y. – BAUDOIN, E. – NAZARET, S. – MOËNNE-LOCCOZ, Y. – OKON, Y. – JURKEVITCH, E. 2006. Effect of Azospirillum brasilense on rhizobacterial communities analyzed by denaturing gradient gel electrophoresis and automated intergenic spacer analysis. In Soil Biology & Biochemistry, vol. 38, no. 6, pp. 1212–1218. 10.1016/j.soilbio.2005.10.007LERNERA.HERSCHKOVITZY.BAUDOINE.NAZARETS.MOËNNE-LOCCOZY.OKONY.JURKEVITCHE.2006Effect of Azospirillum brasilense on rhizobacterial communities analyzed by denaturing gradient gel electrophoresis and automated intergenic spacer analysisSoil Biology & Biochemistry3861212121810.1016/j.soilbio.2005.10.007Open DOISearch in Google Scholar

MacDONALD, C.A. – CLARK, I.M. – ZHAO, F.J. – HIRSCH, P.R. – SINGH, B.K. – MCGRATH, S.P. 2011. Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils. In Soil Biology & Biochemistry, vol. 43, pp. 932–941. 10.1016/j.soilbio.2011.01.004MacDONALDC.A.CLARKI.M.ZHAOF.J.HIRSCHP.R.SINGHB.K.MCGRATHS.P.2011Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soilsSoil Biology & Biochemistry4393294110.1016/j.soilbio.2011.01.004Open DOISearch in Google Scholar

MAGURRAN, A.E. 2004. Measuring Biological Diversity. Blackwell Science Ltd., USA: Blacwell Publishing, 260 pp. ISBN 0-632-05633-9MAGURRANA.E.2004Measuring Biological DiversityBlackwell Science Ltd., USABlacwell Publishing260ISBN 0-632-05633-9Search in Google Scholar

MATTANA, S. – PETROVIČOVÁ, B. – LANDI, L. – GELSOMINO, A. – CORTÉS, P. – ORTIZ, O. – RENELLA, G. 2014. Sewage sludge processing determines its impact on soilmicrobial community structure and function. In Applied Soil Ecology, vol. 75, pp. 150–161. http://dx.doi.org/10.1016/j.apsoil.2013.11.007MATTANAS.PETROVIČOVÁB.LANDIL.GELSOMINOA.CORTÉSP.ORTIZO.RENELLAG.2014Sewage sludge processing determines its impact on soilmicrobial community structure and functionApplied Soil Ecology75150161http://dx.doi.org/10.1016/j.apsoil.2013.11.007Search in Google Scholar

MILLER, H.J. – HEKEN, G. – VANVEEN, J.A. 1989. Variation and composition of bacterial populations in the rhizosphere of maize, wheat and grass cultivars. In Canadian Journal of Microbiology, vol. 35, no. 6, pp. 656–60. 10.1139/m89-106MILLERH.J.HEKENG.VANVEENJ.A.1989Variation and composition of bacterial populations in the rhizosphere of maize, wheat and grass cultivarsCanadian Journal of Microbiology3566566010.1139/m89-106Open DOISearch in Google Scholar

MOFFETT, B.F. – NICHOLSON, F.A. – UWAKWE, N.C. – CHAMBERS, B.J. – HARRIS, J.A. – HILL, T.C.J. 2003. Zinc contamination decreases the bacterial diversity of agricultural soil. In FEMS Microbiology Ecology, vol. 43, no. 1, pp. 13–19. 10.1111/j.1574-6941.2003.tb01041.xMOFFETTB.F.NICHOLSONF.A.UWAKWEN.C.CHAMBERSB.J.HARRISJ.A.HILLT.C.J.2003Zinc contamination decreases the bacterial diversity of agricultural soilFEMS Microbiology Ecology431131910.1111/j.1574-6941.2003.tb01041.x19719692Open DOISearch in Google Scholar

MULDER, C.P.H. – BAZELEY-WHITE, E. – DIMITRAKOPOULOS, P.G. – HECTOR, A. – SCHERER-LORENZEN, M. – SCHMID, B. 2004. Species evenness and productivity in experimental plant communities. In Oikos, vol. 107, pp. 50–63. 10.1111/j.0030-1299.2004.13110.xMULDERC.P.H.BAZELEY-WHITEE.DIMITRAKOPOULOSP.G.HECTORA.SCHERER-LORENZENM.SCHMIDB.2004Species evenness and productivity in experimental plant communitiesOikos107506310.1111/j.0030-1299.2004.13110.xOpen DOISearch in Google Scholar

NAKATANI, A.S. – MARTINES, A.M. – NOGUEIRA, M.A. – FAGOTTI, D.S.L. – OLIVEIRA, A.G. – BINI, D. – SOUSA, J.P. – CARDOSO, E.J.B.N. 2011. Changes in the genetic structure of bacteria and microbial activity in an agricultural soil amended with tannery sludge. In Soil Biology & Biochemistry, vol. 43, pp. 106–114. 10.1016/j.soilbio.2010.09.019NAKATANIA.S.MARTINESA.M.NOGUEIRAM.A.FAGOTTID.S.L.OLIVEIRAA.G.BINID.SOUSAJ.P.CARDOSOE.J.B.N.2011Changes in the genetic structure of bacteria and microbial activity in an agricultural soil amended with tannery sludgeSoil Biology & Biochemistry4310611410.1016/j.soilbio.2010.09.019Open DOISearch in Google Scholar

ONDREIČKOVÁ, K. – BABULICOVÁ, M. – MIHÁLIK, D. – GUBIŠOVÁ, M. – GUBIŠ, J. 2014. Screening of bacterial populations in crop rotations with different proportion of cereals. In Agriculture (Poľnohospodárstvo), vol. 60, no. 1, pp. 31−38. 10.2478/agri-2014-0004ONDREIČKOVÁK.BABULICOVÁM.MIHÁLIKD.GUBIŠOVÁM.GUBIŠJ.2014Screening of bacterial populations in crop rotations with different proportion of cerealsAgriculture (Poľnohospodárstvo)601313810.2478/agri-2014-0004Open DOISearch in Google Scholar

ONDREIČKOVÁ, K. – KRAIC, J. 2015. Impact of genetically modified stacked maize NK603 × MON810 on the genetic diversity of rhizobacterial communities. 2015. In Agriculture (Poľnohospodárstvo), vol. 61, no. 4, pp. 139−148. 10.1515/agri-2015-0019ONDREIČKOVÁK.KRAICJ.2015Impact of genetically modified stacked maize NK603 × MON810 on the genetic diversity of rhizobacterial communities. 2015Agriculture (Poľnohospodárstvo)61413914810.1515/agri-2015-0019Open DOISearch in Google Scholar

PERRIER, X. – JACQUEMOUD-COLLET, J.P. 2006. DARwin software. http://darwin.cirad.fr/PERRIERX.JACQUEMOUD-COLLETJ.P.2006DARwin softwarehttp://darwin.cirad.fr/Search in Google Scholar

PIELOU, E.C. 1966. The measurement of diversity in different types of biological collections. In Journal of Theoretical Biology, vol. 13, pp. 131‒144.PIELOUE.C.1966The measurement of diversity in different types of biological collectionsJournal of Theoretical Biology1313114410.1016/0022-5193(66)90013-0Search in Google Scholar

POULSEN, P.H.B. – AL-SOUD, W.A. – BERGMARK, L. – MAGID, J. – HANSEN, L.H. – SØRENSEN, S.J. 2013. Effects of fertilization with urban and agricultural organic wastes in a field trial - Prokaryotic diversity investigated by pyrosequencing. In Soil Biology & Biochemistry, vol. 57, pp. 784–793. 10.1016/j.soilbio.2011.12.023POULSENP.H.B.AL-SOUDW.A.BERGMARKL.MAGIDJ.HANSENL.H.SØRENSENS.J.2013Effects of fertilization with urban and agricultural organic wastes in a field trial - Prokaryotic diversity investigated by pyrosequencingSoil Biology & Biochemistry5778479310.1016/j.soilbio.2011.12.023Open DOISearch in Google Scholar

SESSITSCH, A. – WEILHARTER, A. – GERZABEK, M.H. – KIRCHMANN, H. – KANDELER, E. 2001. Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment. In Applied and Environmental Microbiology, vol. 67, no. 9, pp. 4215–4224. 10.1128/AEM.67.9.4215-4224.2001SESSITSCHA.WEILHARTERA.GERZABEKM.H.KIRCHMANNH.KANDELERE.2001Microbial population structures in soil particle size fractions of a long-term fertilizer field experimentApplied and Environmental Microbiology6794215422410.1128/AEM.67.9.4215-4224.20019315011526026Open DOISearch in Google Scholar

SHANNON, C.E. – WEAVER, W. 1948. A mathematical theory of communication. In The Bell System Technical Journal, vol. 2, pp. 379–423 and 623–656.SHANNONC.E.WEAVERW.1948A mathematical theory of communicationThe Bell System Technical Journal237942362365610.1002/j.1538-7305.1948.tb01338.xSearch in Google Scholar

ŠUŇOVSKÁ, A. – HORNÍK, M. – PIPÍŠKA, M. – LESNÝ, J. – AUGUSTÍN, J. – HOSTIN, S. 2013. Characterization of soil additive derived from sewage sludge. In Nova Biotechnologica et Chimica, vol. 12, no. 2, pp. 141–153. 10.2478/nbec-2013-0016ŠUŇOVSKÁA.HORNÍKM.PIPÍŠKAM.LESNÝJ.AUGUSTÍNJ.HOSTINS.2013Characterization of soil additive derived from sewage sludgeNova Biotechnologica et Chimica12214115310.2478/nbec-2013-0016Open DOISearch in Google Scholar

Document 31986L0278 - Council Directive 86/278/EEC of 12 June 1986 on the protection of the environment, and in particular of the soil, when sewage sludge is used in agriculture. Available at http://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A31986L0278.Document 31986L0278 - Council Directive 86/278/EEC of 12 June 1986 on the protection of the environment, and in particular of the soil, when sewage sludge is used in agriculture. Available at http://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A31986L0278.Search in Google Scholar

eISSN:
1338-4376
Język:
Angielski
Częstotliwość wydawania:
4 razy w roku
Dziedziny czasopisma:
Life Sciences, Plant Science, Ecology, other