[Agyekum A.K., Woyengo T.A., Słomiński B.A., Yin Y.L., Nyachoti C.M. (2014). Effects of formulating growing pig diet with increasing levels of wheat-corn distillers dried grains with solubles on digestible nutrient basis on growth performance and nutrient digestibility. J. Anim. Physiol. Anim. Nutr. (Berl)., 98: 651-658.]Search in Google Scholar
[Benjamini Y., Hochberg Y. (1995). Controlling the false discovery rate:apractical and powerful approach to multiple testing. J. Roy. Stat. Soc. B, 57: 289-300.]Search in Google Scholar
[Chomczyński P., Sacchi N. (1987). Single-step method of RNAisolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem., 162: 156-159.]Search in Google Scholar
[Cromwell G.L., Azain M.J., Adeola O., Baidoo S.K., Carter S.D., Crenshaw T.D., Kim W.S., Mahan D.C., Miller P.S., Shannon M.C. (2011). Corn distillers dried grains with solubles in diets for growing-finishing pigs: Acooperative study. J. Anim. Sci., 89: 2801-2811.]Search in Google Scholar
[Culnan D.M., Cooney R.N., Stanley B., Lynch C.J. (2009). Apolipoprotein A-IV,aputative satiety/antiatherogenic factor, rises after gastric bypass. Obesity (Silver Spring), 17: 46-52.]Search in Google Scholar
[Deluca D.S., Levin J.Z., Sivachenko A., Fennell T., Nazaire M.D., Williams C., Reich M., Winckler W., Getz G. (2012). RNA-Se QC: RNA-seq metrics for quality control and process optimization. Bioinformatics, 28: 1530-1532.]Search in Google Scholar
[Dodt M., Roehr J.T., Ahmed R., Dieterich C. (2012). FLEXBAR-Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms. Biology (Basel), 1: 895-905.]Search in Google Scholar
[Döring F., Lüersen K., Schmelzer C., Hennig S., Lang I.S., Görs S., Rehfeldt C., Otten W., Metges C.C. (2013). Influence of maternal low protein diet during pregnancy on hepatic gene expression signature in juvenile female porcine offspring. Mol. Nutr. Food Res., 57: 277-290.]Search in Google Scholar
[Esteve - Codina A., Kofler R., Palmieri N., Bussotti G., Notredame C., Pérez- - Enciso M. (2011). Exploring the gonad transcriptome of two extreme male pigs with RNA-seq. BMC Genomics, 12: 552.]Search in Google Scholar
[Feranil A.B., Duazo P.L., Kuzawa C.W., Adair L.S. (2011). Coconut oil is associated with a beneficial lipid profile in pre-menopausal women in the Philippines. Asia Pac. J. Clin. Nutr., 20: 190-195.]Search in Google Scholar
[Flicek P., Amode M.R., Barrell D., Beal K., Brent S., Carvalho - Silva D., Clapham P., Coates G., Fairley S., Fitzgerald S., Gil L., Gordon L., Hendrix M., Hourlier T., Johnson N., K ähäri A.K., Keefe D., Keenan S., Kinsella R., Komorowska M., Kościelny G., Kulesha E., Larsson P., Longden I., Mc Laren W., Muffato M., Overduin B., Pignatelli M., Pritchard B., Riat H.S., Ritchie G.R., Ruffier M., Schuster M., Sobral D., Tang Y.A., Taylor K., Trevanion S., Vandrovcova J., White S., Wilson M., Wilder S.P., Aken B.L., Birney E., Cunningham F., Dun- ham I., Durbin R., Fernández - Suarez X.M., Harrow J., Herrero J., Hub- bard T.J., Parker A., Proctor G., Spudich G., Vogel J., Yates A., Zadissa A., Searle S.M. (2012). Ensembl 2012, Nucleic Acids Research, 40: D84-D90.10.1093/nar/gkr991324517822086963]Search in Google Scholar
[Gunawan A., Sahadevan S., Cinar M.U., Neuhoff C., Große- Brinkhaus C., Frieden L., Tesfaye D., Tholen E., Looft C., Wondim D.S., Hölker M., Schellan - der K., Uddin M.J. (2013). Identification of the novel candidate genes and variants in boar liver tissues with divergent skatole levels using RNAdeep sequencing. PLo S One, 8:e72298.]Search in Google Scholar
[Jiménez- Chillarón J.C., Díaz R., Martínez D., Pentinat T., Ramón- Krauel M., Ribó S., Plösch T. (2012). The role of nutrition on epigenetic modifications and their implications on health. Review. Biochimie, 94: 2242-2263.]Search in Google Scholar
[Jun H., Daiwen C., Bing Y. (2010). Metabolic and transcriptomic responses of weaned pigs induced by different dietary amylose and amylopectin ratio. PLo S One, 5: e15110.]Search in Google Scholar
[Jung W.Y., Kwon S.G., Son M., Cho E.S., Lee Y., Kim J.H., Kim B.W., Parkda H., Hwang J.H., Kim T.W., Park H.C., Park B.Y., Choi J.S., Cho K.K., Chung K.H., Song Y.M., Kim I.S., Jin S.K., Kim D.H., Lee S.W., Lee K.W., Bang W.Y., Kim C.W. (2012). RNA-Seq approach for genetic improvement of meat quality in pig and evolutionary insight into the substrate specificity of animal carbonyl reductases. PLo S One, 7: e42198.]Search in Google Scholar
[Keller J., Ringseis R., Priebe S., Guthke R., Kluge H., Eder K. (2011). Dietary L-carnitine alters gene expression in skeletal muscle of piglets. Mol. Nutr. Food Res., 55: 419-429.]Search in Google Scholar
[Kim S., Sohn I., Ahn J.I., Lee K.H., Lee Y.S., Lee Y.S. (2004). Hepatic gene expression profiles inalong-term high-fat diet-induced obesity mouse model. Gene, 340: 99-109.]Search in Google Scholar
[Kirpich I.A., Gobejishvili L.N., Bon Homme M., Waigel S., Cave M., Arteel G., Barve S.S., Mc Clain C.J., Deaciuc I.V. (2011). Integrated hepatic transcriptome and proteome analysis of mice with high-fat diet-induced nonalcoholic fatty liver disease. J. Nutr. Biochem., 22: 38-45.]Search in Google Scholar
[Langmead B., Salzberg S. (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods, 9: 357‒359.]Search in Google Scholar
[Li F., Duan Y., Li Y., Tang Y., Geng M., Oladele O.A., Kim S.W., Yin Y. (2015). Effects of dietary n-6:n-3 PUFAratio on fatty acid composition, free amino acid profile and gene expression of transporters in finishing pigs. Br. J. Nutr., 113: 739-748.]Search in Google Scholar
[Linneen S.K., De Rouchy J.M., Dritz S.S., Goodband R.D., Tokach M.D., Nels- sen J.L. (2008). Effects of dried distillers grains with solubles on growing and finishing pig performance inacommercial environment. J. Anim. Sci., 86: 1579-1587.]Search in Google Scholar
[Luo W., Cheng D., Chen S., Wang L., Li Y., Ma X., Song X., Liu X., Li W., Liang J., Yan H., Zhao K., Wang C., Wang L., Zhang L. (2012). Genome-wide association analysis of meat quality traits inaporcine Large White × Minzhu intercross population. Int. J. Biol. Sci., 8: 580-595.]Search in Google Scholar
[McCabe M., Waters S., Morris D., Kenny D., Lynn D., Creevey C. (2012). RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance. BMC Genomics, 13: 193.]Search in Google Scholar
[Michas G., Micha R., Zampelas A. (2014). Dietary fats and cardiovascular disease: putting together the pieces ofacomplicated puzzle. Atherosclerosis, 234: 320-328.]Search in Google Scholar
[Müller M., Kersten S. (2003). Nutrigenomics: goals and strategies. Review. Nat. Rev. Genet., 4: 315‒322.]Search in Google Scholar
[Nevin K.G., Rajamohan T. (2004). Beneficial effects of virgin coconut oil on lipid parameters and in vitro LDLoxidation. Clin. Biochem., 37: 830-835.]Search in Google Scholar
[Nevin K.G., Rajamohan T. (2006). Virgin coconut oil supplemented diet increases the antioxidant status in rats. Food Chem., 99: 260-266.]Search in Google Scholar
[Partridge C.G., Fawcett G.L., Wang B., Semenkovich C.F., Cheverud J.M. (2014). The effect of dietary fat intake on hepatic gene expression in LG/J AND SM/Jmice. BMC Genomics, 15: 99.]Search in Google Scholar
[Pfaffl M.W. (2001). Anew mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res., 29: e45.]Search in Google Scholar
[Ramayo - Caldas Y., Mach N., Esteve - Codina A., Corominas J., Castelló A., Ball- ester M., Estellé J., Ibáñez - Escriche N., Fernández A.I., Pérez- Enciso M., Folch J.M. (2012). Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition. BMC Genomics, 13: 547.]Search in Google Scholar
[Ropka-Molik K., Żukowski K., Eckert R., Gurgul A., Piórkowska K., Oczkowicz M. (2014). Comprehensive analysis of the whole transcriptomes from two different pig breeds using RNA-Seq method. Anim. Genet., 45: 674-684.]Search in Google Scholar
[Samborski A., Graf A., Krebs S., Kessler B., Bauersachs S. (2013). Deep sequencing of the porcine endometrial transcriptome on day 14 of pregnancy. Biol. Reprod., 88: 84.]Search in Google Scholar
[Świątkiewicz M., Oczkowicz M., Ropka- Molik K., Hanczakowska E. (2016). Effect of dietary fatty acids composition on adipose tissue quality and expression of genes related to lipid metabolism in porcine livers. Anim. Feed Sci. Technol., 216: 204-215.]Search in Google Scholar
[Tan B., Yin Y., Liu Z., Tang W., Xu H., Kong X., Li X., Yao K., Gu W., Smith S.B., Wu G. (2011). Dietary L-arginine supplementation differentially regulates expression of lipid-metabolic genes in porcine adipose tissue and skeletal muscle. J. Nutr. Biochem., 22: 441-445.]Search in Google Scholar
[Tholen E., Looft C., Wondim D.S., Hölker M., Schellander K., Uddin M.J. (2013). Identification of the novel candidate genes and variants in boar liver tissues with divergent skatole levels using RNAdeep sequencing. PLo S One, 8: e72298.]Search in Google Scholar
[Trapnell C., Pachter L., Salzberg S.L. (2009). Top Hat: discovering splice junctions with RNA-Seq. Bioinformatics, 25: 1105-1111.]Search in Google Scholar
[Trapnell C., Williams B.A., Pertea G., Mortazavi A., Kwan G.,van Baren M.J., Salzberg S.L., Wold B.J., Pachter L. (2010). Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol., 28: 511-515.]Search in Google Scholar
[Tyra M., Żak G. (2012). Analysis of relationships between fattening and slaughter performance of pigs and the level of intramuscular fat (IMF) in longissimus dorsi muscle. Ann. Anim. Sci., 12: 169-178. ]Search in Google Scholar
