Cross-Genera Transferability of Microsatellite Markers and Phylogenetic Assessment of Three Salsola Species from Western Kazakhstan

Anonymous (2018). The Sixth National Report of Biological Diversity in the Republic of Kazakhstan. Astana. 227 pp. Available at: https://www.cbd.int/doc/nr/nr-06/kz-nr-06-en.pdfSearch in Google Scholar

Abdel-Hamid, A. M. E. (2016). Characterization of four Salsola species and their genetic relationship by AFLP. Pak. J. Bot., 48 (3), 1183–1187.Search in Google Scholar

Abdulina, S. A. (1999). Checklist of Vascular Plants in Kazakhstan. Almaty. 187 pp.Search in Google Scholar

Akhani, H., Edwards, G., Roalson, E. H. (2007). Diversification of the Old World Salsoleae s.l. (Chenopodiaceae): Molecular phylogenetic analysis of nuclear and chloroplast data sets and a revised classification. Int. J. Plant. Sci., 168 (6), 931–956.10.1086/518263Search in Google Scholar

Akhani, H., Khoshravesh, R., Malekmohammadi, M. (2016). Taxonomic novelties from Irano-Turanian region and NE Iran: Oreosalsola, a new segregate from Salsola sl, two new species in Anabasis and Salvia, and two new combinations in Caroxylon and Sesel. Phytotaxa, 249 (1), 159–180.10.11646/phytotaxa.249.1.7Search in Google Scholar

Akopian, J. A. (2011). Genus Salsola L. sensu lato (Chenopodiaceae) in South Transcaucasia [Акопян Ж. А. Род Salsola sensu lato (Chenopodiaceae) в Южном Закавказье]. Takhtajania [Тахтаджяния], 1, 124–132 (in Russian).Search in Google Scholar

Alirzayeva, E., Ali-zade, V., Shirvani, T., Toderich, K. (2015). Evaluation of wild halophytes of Aralo-Caspian flora towards soil restoration and food security improvement. In: Öztürk, M., Ashraf, M., Aksoy, A., Ahmad, M., Hakeem., K. (eds.) Plants, Pollutants and Remediation. Springer, Dordrecht, pp. 63–98.10.1007/978-94-017-7194-8_4Search in Google Scholar

Almerekova, S., Lisztes-Szabo, Zs., Mukhitdinov, N., Kurmanbayeva, M., Abidkulova, K., Sramko, G. (2018). Genetic diversity and population genetic structure of the endangered Kazakh endemic Oxytropis almaatensis (Fabaceae). Acta Bot. Hung., 60 (3–4), 263–278.10.1556/034.2018.1Search in Google Scholar

Ayres, D., Ryan, F.J., Grotkopp, E., Bailey, J., Gaskin, J. (2009). Tumble-weed (Salsola, section Kali) species and speciation in California. Biol. Invasions, 11 (5), 1175–1187.10.1007/s10530-008-9380-5Search in Google Scholar

Bochantsev, V. P. (1969). Genus Salsola L., a brief history of its development and settlement [Бочанцев В. П. Род Salsola L., краткая история его развития и расселения]. Bot. J. [Бот. журн], 54 (7), 989–1001 (in Russian).Search in Google Scholar

Botstein, D., White, R. L., Skolnick, M., Daviset, R. W. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Amer. J. Hum. Genet., 32 (3), 314–331.Search in Google Scholar

Chagné, D., Chaumeil, P., Ramboer, A., Collada, C., Guevara, A., Cervera, M. T., Vendramin, G. G., Garcia, V., Frigerio, J. M., Echt, C., Richardson, T., Plomion, C. (2004). Cross-species transferability and mapping of genomic and cDNA SSRs in pines. Theor. Appl. Genet., 109 (6), 1204–1214.10.1007/s00122-004-1683-z15448894Search in Google Scholar

Chen, S., Yao, H., Han, J., Liu, C., Song, J., Shi, L., Zhu, Y., Ma, X., Gao, T., Pang, X, Luo, K., Li, Y., Li, X., Jia, X., Lin, Y., Leon, C. (2010). Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PloS One,5 (1), e8613.10.1371/journal.pone.0008613279952020062805Search in Google Scholar

Cureton, A. N., Burns, M. J., Ford-Lloyd, B. V., Newbury, H. J. (2002). Development of simple sequence repeat (SSR) markers for the assessment of gene flow between sea beet (Beta vulgaris ssp. maritima) populations. Mol. Ecol. Notes., 2 (4), 402–403.10.1046/j.1471-8286.2002.00253.xSearch in Google Scholar

Dossett, M., Bassil, N. V., Finn, C. E. (2009). Transferability of Rubus microsatellite markers for use in black raspberry. HortScience, 44, 103–109.10.17660/ActaHortic.2010.859.11Search in Google Scholar

Doyle, J. J., Doyle, J. L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull.,19 (1), 11–15.Search in Google Scholar

Ekué, M. R. M., Gailing, O., Finkeldey, R. (2009). Transferability of simple sequence repeat (SSR) markers developed in Litchi chinensis to Blighia sapida (Sapindaceae). Plant Mol. Biol. Rep., 27 (4), 570.10.1007/s11105-009-0115-2388156824415832Search in Google Scholar

Fan, L., Zhang, M. Y., Liu, Q. Z., Li, L. T., Song, Y., Wang, L. F., Zhang, S. L., Wu, J. (2013). Transferability of newly developed pear SSR markers to other Rosaceae species. Plant Mol. Biol. Rep. 31 (6), 1271–1282.10.1007/s11105-013-0586-z388156924415844Search in Google Scholar

Feng, S. P., Li, W. G., Huang, H. S., Wang, J. Y., Wu, Y. T. (2009). Development, characterization and cross-species/genera transferability of EST-SSR markers for rubber tree (Hevea brasiliensis). Mol. Breeding, 23 (1), 85–97.10.1007/s11032-008-9216-0Search in Google Scholar

Freitag, H. (1997). Salsola L. (Chenopodiaceae). In: Flora Iranica. Akadesche Druck-u, Verlagsanstalt, Graz, pp. 154–255.Search in Google Scholar

Gasic, K., Han, Y., Kertbundit, S., Shulaev, V., Lezzoni, A. F., Stover, E. W., Bell, R. L., Wisniewski, M. E., Korban, S. S. (2009). Characteristics and transferability of new apple EST-derived SSRs to other Rosaceae species. Mol. Breeding., 23 (3), 397–411.10.1007/s11032-008-9243-xSearch in Google Scholar

Giraldo, E., Viruel, M. A., Lopez-Corrales, M., Hormaza, J. I. (2005). Char-acterisation and cross-species transferability of microsatellites in the common fig (Ficus carica L.). J. Hortic. Sci. Biotech., 80 (2), 217–224.10.1080/14620316.2005.11511920Search in Google Scholar

González-Martínez, S. C., Robledo-Arnuncio, J. J., Collada, C., Diaz, A., Williams, C. G., Alia, R., Cervera, M. T. (2004). Cross-amplification and sequence variation of microsatellite loci in Eurasian hard pines. Theor. Appl. Genet., 109 (1), 103–111.10.1007/s00122-004-1596-x14985972Search in Google Scholar

Grubov, V. I. (1980). Family Chenopodiaceae. [Грубов В. И. Семейство Маревые (Chenopodiaceae)]. In: Plant Life [Жизнь растений]. Education, Moscow, pp. 374–382 (in Russian).Search in Google Scholar

Hammer, O., Harper, D. A. T., Ryan, P. D. (2001). PAST: Paleontological statistics software package for education and data analysis. Palaeontol. Electron, 4 (1), 9.Search in Google Scholar

Huson, D. H., Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Molec. Biol. Evol.,23 (2), 254–267.10.1093/molbev/msj03016221896Search in Google Scholar

Komarov, V. L. (1936). Flora of the USSR [Комаров В. Л. Флора CCCP]. Science, Leningrad (in Russian).Search in Google Scholar

Kumar, S., Stecher, G., Tamura, K. (2016). MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molec. Biol. Evol., 33 (7), 1870–1874.10.1093/molbev/msw054Search in Google Scholar

Kurochkina, L.Ya. (2003). Psammofit desert shrub [Курочкина Л.Я. Псаммофитнокустарниковые пустыни]. In: Akzhigitova, N. I., Brekle, Z. V., Volkova, E. A. Geography of Kazakhstan and Central Asia (Within the Desert Region) [Акжигитова Н.И., Брекле З.В., Волкова Е.А. Ботаническая география Казахстана и Средней Азии (в пределах пустынной области)]. Science, St. Petersburg. pp. 83–92 (in Russian).Search in Google Scholar

Larin, I. V., Agababjan, Sh. M., Rabotnov, T. A., Ljubskaja, A. F, Larina, V. K., Kasimenko, M. A. (1951). Feed Plants of Hayfields and Pastures of the USSR [Ларин И. В., Агабабян Ш. М., Работнов Т. А., Любская А. Ф., Ларина В. К., Касименко М. А. Кормовыге растения сенокосов и пастбищ СССР]. State Publishing House of Agricultural Literature, Moscow. 947 pp. (in Russian).Search in Google Scholar

Long, Y., Zhang, J., Tian, X., Wu, S., Zhang, Q., Zhang, J. (2014). De novo assembly of the desert tree Haloxylon ammodendron (CA Mey.) based on RNA-Seq data provides insight into drought response, gene discovery and marker identification. BMC Genomics, 15 (1), 1–11.10.1186/1471-2164-15-1111Search in Google Scholar

McGray, H. G., Ayres, D. R., Sloop, C. M., Lee, A. K. (2008). Beta SSR loci cross-amplify in five Salsola taxa. Mol. Ecol. Resour., 8 (3), 608–611.10.1111/j.1471-8286.2007.02014.x21585847Search in Google Scholar

Metsalu, T., Vilo, J. (2015). ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap. Nucleic Acids Res., 43 (W1), W566–W570.10.1093/nar/gkv468448929525969447Search in Google Scholar

Milic, D., Lukovic, J., Zoric, L., Vasin, J., Ninkov, J., Zeremski, T., Milic, S. (2013). Halophytes relations to soil ionic composition. J. Serb. Chem. Soc., 78 (8), 1259–1268.10.2298/JSC121102159MSearch in Google Scholar

Morenko, M. O. (2007). Halophytes of Altai mountainous system by example of family Chenopodiaceae [Моренко М. О. Галофиты Алтайской горной системы на примере семейства Маревые (Chenopodiaceae)]. Bulletin of Tomsk State University [Вестник Томского государственного университета], 298, 222–223 (in Russian).Search in Google Scholar

Mosyakin, S. L. (2003). Salsola Linnaeus. Flora of North America North of Mexico, 4, 398–403.Search in Google Scholar

Pallas, P. S. (1771). Reise durch verschiedene Provinzen des Russischen Reichs. Kayserliche Academie der Wissenschaften, St. Petersburg (in German). 504 pp.Search in Google Scholar

Pavlov, N. V. (1960). Flora of Kazakhstan [Павлов H. В. Флора Казахстана]. Science, Alma-Ata (in Russian).Search in Google Scholar

Peakall, R., Smouse, P. E. (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes., 6, 288–295.10.1111/j.1471-8286.2005.01155.xSearch in Google Scholar

Peakall, R., Smouse, P. E. (2012). GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics, 28, 2537–2539.10.1093/bioinformatics/bts460346324522820204Search in Google Scholar

Popova, O. A (2015). Node structure of some species of the genera Salsola L. and Anabasis L. (Chenopodiaceae) and significance of this characteristic for systematics [Попова О. А. Строение узла некоторых видов родов Salsola L. и Anabasis L. (Chenopodiaceae) и значение этого признака для систематики]. Scientific Notes of the Transbaikal state University. Series: Biological Sciences [Ученые записки Забайкальского государственного университета. Серия: Биологические науки], 60 (1), 31–36 (in Russian).Search in Google Scholar

Pyankov, V. I., Artyusheva, E. G., Edwards, G. E., Black, Jr. C. C., Soltis, P. S. (2001). Phylogenetic analysis of tribe Salsoleae (Chenopodiaceae) based on ribosomal ITS sequences: Implications for the evolution of photo-synthesis types. Amer. J. Bot., 88 (7), 1189–1198.10.2307/3558329Search in Google Scholar

Qin, Y., Li, M., Cao, Y., Gao, Y., Zhang, W. (2017). Molecular thresholds of ITS2 and their implications for molecular evolution and species identification in seed plants. Sci. Rep., 7 (1), 1–8.10.1038/s41598-017-17695-2572541829229945Search in Google Scholar

Rozas, J., Ferrer-Mata, A., Sánchez-DelBarrio, J.C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S. E., Sánchez-Gracia, A. (2017). DnaSP 6: DNA sequence polymorphism analysis of large data sets. Mol. Biol. Evol., 34 (12), 3299–3302.10.1093/molbev/msx24829029172Search in Google Scholar

Ryan, F. J., Ayres, D. R. (2000). Molecular markers indicate two cryptic, genetically divergent populations of Russian thistle (Salsola tragus) in California. Can. J. Botany, 78 (1), 59–67.10.1139/b99-160Search in Google Scholar

Saitou, N., Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4 (4), 406–425.Search in Google Scholar

Shujskaja, E. V., Toderich, K. N. (2013). Isoenzymatic polymorphism in annual species of Salsola section Kali (Salsola aperta, S. paulsenii, S. pestifer and S. sogdiana) [Шуйская E. В., Тодерич К. H. Полиморфизм белков у однолетних видов Salsola секции Kali (Salsola aperta, S. paulsenii, S. pestifer и S. sogdiana)]. Bulletin of Bashkir University [Вестник Башкирского университета], 18 (2), 378–382 (in Russian).Search in Google Scholar

Sokolov, S. Ja., Svjazeva, O. A., Kubli, V. A. (1980). Areas of Trees and Shrubs of the USSR [Соколов С. Я., Связева О.А., Кубли В.А. Ареалыг деревьев и кустарников СССР]. Science, Leningrad (in Russian).Search in Google Scholar

Suhorukov, A. P. (2007). Horological method in solving problems of phylogeny and systematics of Eurasian representatives of the Chenopodiaceae family [Сухоруков А. П. Хорологический метод в решении проблем филогенеза и систематики евразийских представителей семейства Chenopodiaceae]. Arid. Ecosyst. [Аридныге экосистемыг],13 (32), 19-33 (in Russian).Search in Google Scholar

Toderich, K. N., Popova, V. V., Aralova, D. B., Gismatulina, L. G., Rekik, M., Rabbimov, A. R. (2016). Halophytes and salt tolerant forages as animal feed at farm level in Karakalpakstan [Тодерич К.Н., Попова В.В., Аралова Д.Б., Гисматулина Л.Г., Рекик Мурад и Раббимов А.Р. Галофитыг и солеустойчивыге растения в качестве корма животныгх на уровне фермерских хозяйств в Каракалпакстане]. Tashkent (in Russian).Search in Google Scholar

Turuspekov, Y., Abugalieva, S. (2015). Plant DNA barcoding project in Kazakhstan. Genome, 58 (5), 290.Search in Google Scholar

Turuspekov, Y., Genievskaya, Y., Baibulatova, A., Zatybekov, A., Kotuhov, Y., Imanbayeva, A., Abugalieva, S. (2018). Phylogenetic taxonomy of Artemisia L. species from Kazakhstan based on matK analyses. Proceed. Latv. Acad. Sci. Sect. B.,72 (1), 29–37.10.1515/prolas-2017-0068Search in Google Scholar

Wen, Z. B., Zhang, M. L., Zhu, G. L., Sanderson, S. C. (2010). Phylogeny of Salsoleae s.l. (Chenopodiaceae) based on DNA sequence data from ITS, psbB–psbH, and rbcL, with emphasis on taxa of northwestern China. Plant. Syst. Evol., 288 (1–2), 25–42.10.1007/s00606-010-0310-5Search in Google Scholar

Westman, A. L., Kresovich, S. (1997). Use of molecular marker techniques for description of plant genetic variation. Biotechnol. Plant Gen. Res., 9–48.Search in Google Scholar

White, T. J., Bruns, M. E., Lee, S., Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M. A., Gelfand, D. H., Sninsky, J. J., White, T. J. (eds.). PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, pp. 315–322.10.1016/B978-0-12-372180-8.50042-1Search in Google Scholar

Yeh, F. C., Yang, R. C., Boyle, T. B. J., Ye, Z. H., Mao, J. X. (1997). PopGene, the user-friendly shareware for population genetic analysis. POPGENE, user-friendly shareware. Popul. Genet. Anal., 10, 295–301.Search in Google Scholar

Yu, N., Wei, Y. L., Zhang, X., Zhu, N., Wang, Y. L., Zhu, Y., Zang, H. P., Li, F. M., Yang, L., Sun, J. Q., Sun, A. D. (2017). Barcode ITS2: A useful tool for identifying Trachelospermum jasminoides and a good monitor for medicine market. Sci. Rep., 7 (1), 1–9.10.1038/s41598-017-04674-w550605428698616Search in Google Scholar

Yumak, H., Ucar, T., Seyidbekiroglu, N. (2010). Briquetting soda weed (Salsola tragus) to be used as a rural fuel source. Biomass. Bioenerg., 34 (5), 630–636.10.1016/j.biombioe.2010.01.006Search in Google Scholar

Zhang, J., Zhao, P., Zhao, J., Chen, G. (2018). Synteny-based mapping of causal point mutations relevant to sand rice (Agriophyllum squarrosum) trichomeless1 mutant by RNA-sequencing. J. Plant Physiol., 231, 86–95.10.1016/j.jplph.2018.09.00330240969Search in Google Scholar

Zvolinskij, V. P., Tumanjan, A. F., Vvedenskij, V. V. (2013). Restoring and improving of productivity degraded rangeland ecosystems in arid zone of the Caspian sea region [Зволинский В. П., Туманян А. Ф., Введенский В. В. Восстановление и повышение продуктивности деградированных пастбищных экосистем в аридной зоне Прикаспия]. Theoretical and Applied Problems of Agro-Industrial Complex [Теоретические и прикладныге проблемыг агропромыгшленного комплекса], 16 (3), 26-29 (in Russian).Search in Google Scholar