Open Access

Characterisation of Latvia Fruit Crop Genetic Resources by Application of Molecular Genetics Methods

   | Jul 03, 2013

Cite

Anonymous, (2012, November). Latvijas ģenētiskie resursi: Deskriptori [Latvian genetic resources: Descriptors]. Retrieved 12 November 2012, from <http://www.genres.lv/kulturaugi/deskriptori/>Search in Google Scholar

Antonius, K., Aaltonen, M., Uosukainen, M., Hurme, T. (2012a). Genotypic and phenotypic diversity in Finnish cultivated sour cherry (Prunus cerasus L.). Genet. Resour. Crop Evol., 59, 375-388.10.1007/s10722-011-9688-3Search in Google Scholar

Antonius, K., Karhu, S., Kaldmae, H., Lacis, G., Rugenius, R., Baniulis, D., Sasnauskas, A., Schulte, E., Kuras, A., Korbin, M., Gunnarsson, A., Werlemark, G., Ryliskis, D., Todam-Andersen, T., Kokk, L., Jarve, K. (2012b). Development of the Northern European Ribes core collection based on a microsatellite (SSR) marker diversity analysis. Plant Gen. Res. Cha. Utiliz., 10 (1), 70-73.10.1017/S1479262111000980Search in Google Scholar

Badjakov, I., Todorovska, E., Boicheva, R., Atanassov, I., Atanassov A. (2005). Assessment of genetic diversity in Bulgarian raspberry germplasm collection by microsatelite markers (SSR). Biotechnol. Biotechnol. Eq., 19 (1),43-7.10.1080/13102818.2005.10817152Search in Google Scholar

Bao, L., Chen, K., Zhang, D., Li, X., Teng, Y. (2008). An assessment of ge­netic variability and relationships within Asian pears based on AFLP (am­plified fragment length polymorphism) markers. Sci. Hort., 116,374-380.10.1016/j.scienta.2008.02.008Search in Google Scholar

Borner, A., Khlestkina, E. K., Chebotar, S., Nagel, M., Arif, M. A. R., Neumann, K., Kobiljski, B., Lohwasser, U., Roder, M. S. (2012). Molecu­lar markers in management of ex situ PGR: A case study. J. Biosci., 37, 871-877.10.1007/s12038-012-9250-223107922Search in Google Scholar

Bus, V. G. M., Rikkerink, E. H. A., Caffier, V., Durel, C.-E., Plummer, K. M. (2011). Revision of the nomenclature of the differential host-pathogen in­teractions of Venturia inaequalis and Malus. Annu. Rev. Phytopathol., 49, 391-13.10.1146/annurev-phyto-072910-09533921599495Search in Google Scholar

Cavanna, M., Torello Marinoni, D., Beccaro, G. L., Bounous, G. (2009). Microsatellite-based evaluation of Ribes spp. germplasm. Genome, 52 (10), 839-848.Search in Google Scholar

Clarke, J. B., Tobutt, K. R. (2009). A standard set of accessions, microsatellites and genotypes for harmonizing the fingerprinting of cherry collections for the ECPGR. Acta Hort., 814, 615-618. de Nettancourt, D. (1977). Incompatibility in angiosperms. Sexual Plant Reprod, 10, 185-199.Search in Google Scholar

DeYoung, B. J., Innes, R. W. (2006). Plant NBS-LRR proteins in pathogen sensing and host defence. Nat. Immunol., 7 (12), 1243-1249.10.1038/ni1410197315317110940Search in Google Scholar

Engels, J. M. M., Visser, L. (eds). (2003). A Guide to Effective Management of Germplasm Collections. IPGRI Handbooks for Genebanks, No. 6. IPGRI, Rome, Italy. 172 pp.Search in Google Scholar

Fahrentrapp, J., Broggini, G. A. L., Kellerhals, M., Peil, A., Richter, K., Zini, E., Gessler, C. (2013). A candidate gene for fire blight resistance in Malus x robusta 5 is coding for a CC-NBS-LRR. Tree Genetics Genomes, 9 (1), 237-251.10.1007/s11295-012-0550-3Search in Google Scholar

Fernandez i Marti, A., Athanson, B., Koepke, T., Font i Forcada, C., Dhingra, A., Oraguzie, N. (2012). Genetic diversity and relatedness of sweet cherry (Prunus avium L.) cultivars based on single nucleotide polymorphic mark­ers. Front. Plant Sci., 3, 116.Search in Google Scholar

Ferreira, M. E. (2006). Molecular analysis of gene banks for sustainable con­servation and increased use of crop genetic resources. In: Ruane, J., Sonnino, A. (eds.). The Role ofBiotechnology in Exploring and Protecting Agricultural Genetic Resources (pp. 121-127). Rome: FAO.Search in Google Scholar

Frankel, O. H., Soule, M. E. (1981). Conservation and Evolution. Cam­bridge, UK: Cambridge University Press, 327 pp.Search in Google Scholar

Galli, P. Patocchi, A., Broggini, G. A. L., Gessler, C. (2010). The Rvi15 (Vr2) Apple scab resistance locus contains three TIR-NBS-LRR Genes. MPMI, 23 (5), 608-617.10.1094/MPMI-23-5-060820367469Search in Google Scholar

Gianfranceschi, L., Seglias, N., Tarchini, R., Komjanc, M., Gessler, C. (1998). Simple sequence repeats for the genetic analysis of apple. Theor. Appl. Genet., 96, 1069-1076.10.1007/s001220050841Search in Google Scholar

Graham, J., Smith, K., Woodhead, M., Russell, J. (2002). Development and use of simple sequence repeat SSR markers in Rubus species. Mol. Ecol. Notes, 2 (3), 250-252.10.1046/j.1471-8286.2002.00203.xSearch in Google Scholar

Gross, B. L., Volk, G. M., Richards, C. M., Forsline, P. L., Fazio, G., Chao, C. T. (2012). Identification of „Duplicate” Accessions within the USDA-ARS National Plant Germplasm System Malus Collection. J. Amer. Soc. Hort. Sci., 137 (5), 333-342.10.21273/JASHS.137.5.333Search in Google Scholar

Hattendorf, A., Debener T. (2007). Molecular characterization of NBS- LRR-RGAs in the rose genome. Physiol. Plantarum, 129, 775-786.10.1111/j.1399-3054.2007.00876.xSearch in Google Scholar

Haussmann, B. I. G., Parzies, H. K., Presterl, T., Susie, Z., Miedaner T. (2004). Plant genetic resources in crop improvement. Plant Gen. Res., 2 (1), 3-21.10.1079/PGR200430Search in Google Scholar

He, P., Li, L., Li, H., Wang, H., Yang, J., Wang, Y. (2011). Genetic analysis of wild apple resources in Shandong province based on inter-simple se­quence repeats (ISSR) and sequence-specific amplification polymorphism (S-SAP) markers. Afr. J. Biotechnol., 10 (46), 9501-9508.Search in Google Scholar

Hegedus, A., Halasz J. (2007). Recent findings of the tree fruit self-incom­patibility studies. Int. J. Hort. Sci., 13 (2), 7-15.Search in Google Scholar

Ikase, L., Lacis, G. (2013). Apple breeding and genetic resources in Latvia. Acta Horticulturae, 976, 69-74.10.17660/ActaHortic.2013.976.5Search in Google Scholar

Ikase, L., Trajkovski V. (2001). The Swedish-Latvian Malus genetic re­sources research program. In: Broad Variation and Precise Characteriza­tion - Limitation for the Future. EUCARPIA Section Genetic Resources, 16-20 May 2001 (pp. 38-39). Poznan, Poland.Search in Google Scholar

Ikase, L., Lacis, G., Kaufmane, E. (2001). Fruit crop geneticresources in Lat­via. Biologija, 4, 23-25.Search in Google Scholar

Jarni, K., De Cuyper, B., Brus, R. (2012). Genetic variability of wild cherry (Prunus avium L.) seed stands in Slovenia as revealed by nuclear microsatellite loci. PLoS ONE, 7 (7), e41231.Search in Google Scholar

Kampuss, K., Strautina, S., Kampuse S. (2007). Red and white currant ge­netic resources in Latvia. Acta Hort., 760, 397-03.10.17660/ActaHortic.2007.760.53Search in Google Scholar

Karhu, S., Antonius, K., Kaldmae, H., Pluta, S., Kimmo, R., Ryliskis, D., Sasnauskas, A., Schulte, E., Strautina, S., Grout B. (2007). The core collec­tion of the Northern European gene pool of Ribes created by RIBESCO Project. Sodininkyste ir Daržininkyste (Horticulture and Vegetable Growing), 26 (3), 179-186.Search in Google Scholar

Kaufmane, E., Ikase, L., Trajkovski, V., Lacis G. (2002). Evaluation and characterization of plum genetic resources in Sweden and Latvia. Acta Hort., 577, 207-213.10.17660/ActaHortic.2002.577.34Search in Google Scholar

Kaufmane, E., Ikase, L., Trajkovski, V. (2003). Evaluation of Swedish plum varieties and hybrids in Sweden and Latvia. Sodininkyste ir Daržininkyste (Horticulture and Vegetable Growing), 22 (1), 62-73.Search in Google Scholar

Kaufmane, E., Lacis, G., Ikase, L. (2006). Current situation of the Latvian Prunus collections - conservation, evaluation and characterization for the establishment of core collections. In: Report of a Working Group on Pru­nus, Biodiversity International, pp. 66-74.Search in Google Scholar

Kota, I., Lacis, G. (2013). Evaluation of genetic diversity in plum germplasm collection using DNA-based S-genotyping. Acta Hort., 985, 35-210.17660/ActaHortic.2013.985.3Search in Google Scholar

Kota-Dombrovska, I., Lācis, G. (2013). Evaluation of domestic plum (Pru- nus domestica L.) self-incompatibility locus diversity using DNA-based S-genotyping. Proc. Latvian Acad. Sci., Section B., 67 (2).Search in Google Scholar

Kumar, P., Gupta, V. K., Misra, A. K., Modi, D. R., Pandey, B. K. (2009). Potential of Molecular Markers in Plant Biotechnology. Plant Omics J., 2 (4), 141-162.Search in Google Scholar

Lacis, G. (2001). Morphological analysis of Latvian sweet cherry (Prunus avium L.) genetic resources collection. In: Broad Variation and Precise Characterization - Limitationfor the Future. EUCARPIA Section Genetic Resources, 16-20 May 2001 (pp. 225-228). Poznan, Poland.Search in Google Scholar

Lacis, G. (2010). Characterisation of the Latvian and Swedish Sweet and Sour Cherry Genetic Resources. Acta Universitatis Agriculturae Sueciae, DoctoralThesis, No. 2010:89, Sweden. 39 pp.Search in Google Scholar

Lacis, G., Kaufmane, E., Rashal, I., Trajkovski, V., Iezzoni, A. F. (2008). Identification of self-incompatibility (S) alleles in Latvian and Swedish sweet cherry genetic resources collections by PCR based typing. Euphytica, 160, 155-163.10.1007/s10681-007-9496-1Search in Google Scholar

Lacis, G., Kaufmane, E., Trajkovski, V., Rashal, I. (2009). Morphological variability and genetic diversity within Latvian and Swedish sweet cherry collections. Acta Univ. Latv., 753, 19-32.Search in Google Scholar

Lācis, G., Kota, I. (2011). SSR marker-based fingerprinting for sour cherry (Prunus cerasus) genetic resources identification and management. Acta Hort., 976, 251-256.Search in Google Scholar

Lacis, G., Kota, I., Ikase, L., Rungis, D. (2011). Molecular characterization of the Latvian apple (Malus) genetic resource collection based on SSR markers and scab resistance gene Vfanalysis. Plant Gen. Res. Char. Utiliz., 9 (2), 189-192.10.1017/S1479262111000384Search in Google Scholar

Lacis, G., Rashal, I. (2000). Evaluation of variability of morphologicaltraits of Latvian local sweet cherry (P. avium) accessions by means of multidi­mensional analysis. In: Proceedings of International Conference “Fruit Production and Fruit Breeding'" (pp. 147-151). Polli, Estonia.Search in Google Scholar

Lacis, G., Rashal, I. (2001). Use of multidimensional statistical approaches in charecterization of Latvian sweet cherry (Prunus avium L.) genetic re­sources. Hort. Veget. Grow., 20 (3), 211-221.Search in Google Scholar

Lacis, G., Rashal, I., Ruisa, S., Trajkovski, V., Iezzoni, A. F. (2009). Assess­ment of genetic diversity of Latvian and Swedish sweet cherry (Prunus avium L.) genetic resources collections by using SSR (microsatellite) markers. Scientia Hort., 121, 451-57.10.1016/j.scienta.2009.03.016Search in Google Scholar

Lacis, G., Rashal, I., Trajkovski, V. (2010). Comparative analysis of sweet cherry (P. avium) genetic diversity revealed by two methods of SSR marker detection. Proc. Latvian Acad. Sci. Section B, 64 (3/4), 149-158.Search in Google Scholar

Lācis, G., Rashal, I., Trajkovski V. (2011). Implementation ofalimited set of SSR markers for screening of genetic variability in Latvian and Swedish sour cherry (Prunus cerasus L.) genetic resources collections. Proc. Lat- vianAcad. Sci. Section B, 65 (1/2), 21-28.Search in Google Scholar

Lācis, G., Ruisa, S., Kota, I. (2008). Molecular marker application in breed­ing of self- and cross-compatible sweeet cherry (P.avium L.) varieties. In: Proceedings of International Scientific Conference „ Sustainable Fruit Growing: FromPlant to Product”, 28-31 May 2008 (pp. 158-164). Latvia State Institute of Fruit-Growing, Dobele, Latvia.Search in Google Scholar

Lacis, G., Trajkovski, V., Rashal, I. (2010). Phenotypical variability and ge­netic diversity within accessions of the Swedish sour cherry (Prunus cerasus L.) genetic resources collection. Biologija, 56 (1/4), 1-8.Search in Google Scholar

Laurentin, H. (2009). Data analysis for molecular characterization of plant genetic resources. Genet. Resour. Crop Evol., 56, 277-292.10.1007/s10722-008-9397-8Search in Google Scholar

Li, X., Xu, M., Korban, S. S. (2002). DNA methylation profiles differ be­tween field- and in vitro-grown leaves of apple. J. Plant Physiol., 159, 1229-1234.10.1078/0176-1617-00899Search in Google Scholar

Lisek, A., Korbin, M., Rozpara E. (2006). Using simply generated RAPD markers to distinguish between sweet cherry (Prunus avium L.) cultivars. J. Fruit Ornamen. Plant Res., 14 (1), 53-59.Search in Google Scholar

Mafofo, J. (2008). Saturation sequencing, characterisation and mapping of the NBS-LRR resistance gene family in apple, Malus x domestica (Borkh.). PhD Thesis, University of the Western Cape. 351 pp.Search in Google Scholar

Martinez-Gomez, P., Sanchez-Perez, R., Rubio, M., Dicenta, F., Gradziel, T. M., Sozzi, G. O. (2005). Application of recent biotechnologies to Prunus tree crop genetic improvement. Ciencia e Investigacion Agraria, 32 (2), 73-96.10.7764/rcia.v32i2.308Search in Google Scholar

Mitre, I., Lukacs, L., Ardelean, M., Mitre, V., Sestras, R., Pop, R., Cordea, M., (2009). Genotypic Variability of the Main Apple Cultivars Grown in Transylvania, Romania, Evaluated by Means of RAPD Analysis. Not. Bot. Hort. Agrobot. Cluj, 37 (1), 261-264.Search in Google Scholar

Mondini L., Noorani A., Pagnotta M. A. (2009). Assessing plant genetic di­versity by molecular tools. Diversity, 1, 19-35.10.3390/d1010019Search in Google Scholar

Morocko, I., Fatehi, J., Gerhardson, B. (2006). Gnomoniafragariae, a cause of strawberry root rot and petiole blight. Eur. J. Plant Pathol., 114 (3), 235-244.10.1007/s10658-005-5282-xSearch in Google Scholar

Myles, S., Chia, J.-M., Hurwitz, B., Simon, C., Zhong, G.Y., Buckler, E., Ware, D. (2010). Rapid genomic characterization of the genus Vitis. PLoS ONE, 5 (1): e8219.Search in Google Scholar

Panda, S., Martín, J. P., Aguinagalde, I. (2003). Chloroplast DNA study in sweet cherry cultivars (Prunus avium L.) using PCR-RFLP method. Gen. Res. Crop Evol., 50, 489^95.Search in Google Scholar

Patocchi, A., Frei, A., Frey, J. E., Kellerhals, M. (2009). Towards improve­ment of marker assisted selection of apple scab resistant cultivars: Venturia inaequalis avirulence surveys and standardization of molecular marker al­leles associated with resistance genes. Mol. Breed., 24 (4), 337-347.10.1007/s11032-009-9295-6Search in Google Scholar

Pierantoni, L., Dondini, L., Cho, K.-H., Shin, I.-S., Gennari, F., Chiodini, R., Tartarini, S., Kang, S.-J., Sansavini, S. (2007). Pear scab resistance QTLs via a European pear (Pyrus communis) linkage map. Tree Genetics Genomes, 3, 311-317.10.1007/s11295-006-0070-0Search in Google Scholar

Postman, J. D., Spotts, R. A., Calabro, J. (2005). Scab resistance in Pyrus Germplasm. Acta Hort., 671, 601-608.10.17660/ActaHortic.2005.671.84Search in Google Scholar

Potts, S. M., Han, Y., Khan, M. A., Kushad, M. M., Rayburn, A. L., Korban, S. S. (2012). Genetic diversity and characterization of a core collection of malus germplasm using simple sequence repeats (SSRs). Plant Mol. Biol. Rep., 30, 827-837.10.1007/s11105-011-0399-xSearch in Google Scholar

Rashal, I., Lacis, G. (1999). Accessions ofhorticulturalplants in the Latvian plant genetic resources data base. In: Fruit Growing Today and Tomorrow. Collection ofScientific Articles, 4 September, 1998 (pp. 124-130). Dobele, Latvia.Search in Google Scholar

Rashal, I., Rashal D. (1996). Horticulture accessions in the Latvian plant ge­netic resources database. In: Problems of FruitPlantBreeding. Collection ofScientific Articles (pp. 38-41). LLU, Jelgava, Latvia.Search in Google Scholar

Ruisa, S., Lacis, G. (2001). Characterization of Chaenomeles japonica ge­netic resources. Hort. Veget. Grow., 20 (3), 50-60.Search in Google Scholar

Schuster, M. (2012). Incompatible (S-) genotypes of sweet cherry cultivars (Prunus avium L.). Sci. Hort., 148, 59-73.10.1016/j.scienta.2012.09.012Search in Google Scholar

Sefc, K. M., Lefort, F., Grando, M. S., Scott, K. D., Steinkellner, H., Thomas, M. R. (2001). Microsatellite markers for grapevine: A state of the art. In: Roubelakis-Angelakis, K. A. (ed.). Mol. Biol. Biotechnol. Grapevine (pp. 1-30). Dordrecht,: Kluwer Academic Publishers.Search in Google Scholar

Sehic, J., Garkava-Gustavsson, L., Fernandez-Fernandez, F., Nybom, H. (2012). Genetic diversity in a collection of European pear (Pyrus communis) cultivars determined with SSR markers chosen by ECPGR. Sci. Hort., 145, 39-5.10.1016/j.scienta.2012.07.023Search in Google Scholar

Sikorskaite, S., Gelvonauskiene, D., Stanys, V., Baniulis D. (2012). Charac­terization of microsatellite loci in apple (Malus x domestica Borkh.) cultivars. Žemdirbystė (Agriculture), 99 (2), 131-138.Search in Google Scholar

Sonneveld, T., Tobutt, K. R., Robbins, T. P. (2003). Allele-specific PCR de­tection of sweet cherry self-incompatibility (S) alleles S1 to S16 using con­sensus and allele specific primers. Theor. Appl. Genet., 107, 1059-1070.10.1007/s00122-003-1274-414523529Search in Google Scholar

Spooner, D., van Treuren, R., de Vicente, M.C. (eds.). (2005). Molecular Markers for Genebank Management. IPGRI Technical Bulletin No. 10. Rome: International Plant Genetic Resources Institute. 126 pp.Search in Google Scholar

Stanys, V., Baniulis, D., Morkunaite-Haimi, S., Siksnianiene, J. B., Frercks, B., Gelvonauskiene, D., Stepulaitiene, I., Staniene, G., Siksnianas, T. (2012). Characterising the genetic diversity of Lithuanian sweet cherry (Prunus avium L.) cultivars using SSR markers. Sci. Hort., 142, 136-142.10.1016/j.scienta.2012.05.011Search in Google Scholar

Storti, A., Via, J. D., Baric S. (2012). Comparative molecular genetic analy­sis of apple genotypes maintained in germplasm collections. Erwerbs- Obstbau, 55 (3), 137-141.10.1007/s10341-012-0168-5Search in Google Scholar

Strautina, S., Kampuss, K. (2002). Research of Latvian Ribes Genetic Re­sources. Acta Hort., 585, 171-176.10.17660/ActaHortic.2002.585.26Search in Google Scholar

Tao, R., Iezzoni, A. F. (2010). The S-RNase-based gametophytic self-incom­patibility system in Prunus exhibits distinct genetic and molecular features. Sci. Hort., 124 (4), 423^33.Search in Google Scholar

Trajkovski, V., Hjalmarsson, I. (2007). The value of national fruit gene banks. Žemės Ūkio Mokslai (Agricultural Sciences), 14 (4), 28-32. vanTreuren, R., Kemp, H., Ernsting, G., Jongejans, B., Houtman, H., Visser, L. (2010). Microsatellite genotyping of apple (Malus domestica Borkh.) genetic resources in the Netherlands: Application in collection manage­ment and variety identification. Gen. Res. Crop E-vol., 57 (6), 853-865.Search in Google Scholar

Wang, A., Zhang, Q., Wan, D., Yang, Y., Liu, J. (2008). Nine microsatellite DNA primers for Hippophae rhamnoides ssp. sinesis (Elaeagnaceae). Conserv. Genet., 9, 969-971.10.1007/s10592-007-9416-xSearch in Google Scholar

Weising, K., Nybom, H., Wolff, K., Kahl, G. (eds.). (2005). DNA Finger­printing in Plants: Principles, Methods, and Applications. Boca Raton: CRC Press, Taylor & Francis Group. 444 pp.10.1201/9781420040043Search in Google Scholar

Yamamoto, T., Kimura, T., Sawamura, Y., Manabe, T., Kotobuki, K., Hayashi, T., Ban, Y., Matsuta, N. (2002). Simple sequence repeats for ge­netic analysis in pear. Euphytica, 124, 129-137. 10.1023/A:1015677505602Search in Google Scholar

ISSN:
1407-009X
Language:
English
Publication timeframe:
6 times per year
Journal Subjects:
General Interest, Mathematics, General Mathematics