Animal coronaviruses in the light of COVID-19

1Alexander L.K., Small J.D., Edwards S., Baric R.S.: An experimental model for dilated cardiomyopathy after rabbit coronavirus infection. J Infect Dis 1992, 166, 978–985. Alexander L.K. Small J.D. Edwards S. Baric R.S. An experimental model for dilated cardiomyopathy after rabbit coronavirus infection J Infect Dis 1992 166 978 98510.1093/infdis/166.5.97871099311328411Search in Google Scholar

2Almeida J.D., Tyrrell D.A.: The morphology of three previously uncharacterized human respiratory viruses that grow in organ culture. J Gen Virol 1967, 1, 175–178. Almeida J.D. Tyrrell D.A. The morphology of three previously uncharacterized human respiratory viruses that grow in organ culture J Gen Virol 1967 1 175 17810.1099/0022-1317-1-2-1754293939Search in Google Scholar

3Almendros A.: Can companion animals become infected with Covid-19? Vet Rec 2020, 186, 419–420. Almendros A. Can companion animals become infected with Covid-19? Vet Rec 2020 186 419 42010.1136/vr.m132232245870Search in Google Scholar

4Andersen K.G., Rambaut A., Lipkin W.I., Holmes E.C., Garry R.F.: The proximal origin of SARS-CoV-2. Nat Med 2020, 26, 450–452. Andersen K.G. Rambaut A. Lipkin W.I. Holmes E.C. Garry R.F. The proximal origin of SARS-CoV-2 Nat Med 2020 26 450 45210.1038/s41591-020-0820-9709506332284615Search in Google Scholar

5Ballesteros M.L., Sánchez C.M., Enjuanes L.: Two amino acid changes at the N-terminus of transmissible gastroenteritis coronavirus spike protein result in the loss of enteric tropism. Virology 1997, 227, 378–388. Ballesteros M.L. Sánchez C.M. Enjuanes L. Two amino acid changes at the N-terminus of transmissible gastroenteritis coronavirus spike protein result in the loss of enteric tropism Virology 1997 227 378 38810.1006/viro.1996.834471309699018137Search in Google Scholar

6Bank T.W.: The World Livestock Disease Atlas. A quantitative analysis of global animal health data. 2011, Washington, USA: The World Bank. Bank T.W. The World Livestock Disease Atlas. A quantitative analysis of global animal health data 2011 Washington, USA The World BankSearch in Google Scholar

7Belsham G.J., Rasmussen T.B., Normann P., Vaclavek P., Strandbygaard B., Botner A.: Characterization of a novel chimeric swine enteric coronavirus from diseased pigs in Central Eastern Europe in 2016. Transbound Emerg Dis 2016, 63, 595–601. Belsham G.J. Rasmussen T.B. Normann P. Vaclavek P. Strandbygaard B. Botner A. Characterization of a novel chimeric swine enteric coronavirus from diseased pigs in Central Eastern Europe in 2016 Transbound Emerg Dis 2016 63 595 60110.1111/tbed.12579716987427619563Search in Google Scholar

8Beltz L.A., Bats and coronaviruses, in: Bats and Human Health John Wiley & Sons, New York, 2018. pp. 111–138. Beltz L.A. Bats and coronaviruses in Bats and Human Health John Wiley & Sons, New York 2018 111 13810.1002/9781119150060.ch5Search in Google Scholar

9Bermingham A., Chand M.A., Brown C.S., Aarons E., Tong C., Langrish C., Hoschler K., Brown K., Galiano M., Myers R., Pebody R.G., Green H.K., Boddington N.L., Gopal R., Price N., Newsholme W., Drosten C., Fouchier R.A., Zambon M.: Severe respiratory illness caused by a novel coronavirus, in a patient transferred to the United Kingdom from the Middle East, September 2012. Euro Surv 2012, 17, 20290. Bermingham A. Chand M.A. Brown C.S. Aarons E. Tong C. Langrish C. Hoschler K. Brown K. Galiano M. Myers R. Pebody R.G. Green H.K. Boddington N.L. Gopal R. Price N. Newsholme W. Drosten C. Fouchier R.A. Zambon M. Severe respiratory illness caused by a novel coronavirus, in a patient transferred to the United Kingdom from the Middle East, September 2012 Euro Surv 2012 17 2029010.2807/ese.17.40.20290-enSearch in Google Scholar

10Bidokhti M.R.M., Tråvén M., Krishna N.K., Munir M., Belák S., Alenius S., Cortey M.: Evolutionary dynamics of bovine coronaviruses: natural selection pattern of the spike gene implies adaptive evolution of the strains. J Gen Virol 2013, 94, 2036–2049. Bidokhti M.R.M. Tråvén M. Krishna N.K. Munir M. Belák S. Alenius S. Cortey M. Evolutionary dynamics of bovine coronaviruses: natural selection pattern of the spike gene implies adaptive evolution of the strains J Gen Virol 2013 94 2036 204910.1099/vir.0.054940-023804565Search in Google Scholar

11Boni M.F., Lemey P., Jiang X., Lam T.T.-Y., Perry B., Castoe T., Rambaut A., Robertson D.L.: Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic. bioRxiv 2020, doi: 10/1101/2020.03.30.015008. Boni M.F. Lemey P. Jiang X. Lam T.T.-Y. Perry B. Castoe T. Rambaut A. Robertson D.L. Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic bioRxiv 2020 10/1101/2020.03.30.015008Open DOISearch in Google Scholar

12Borucki M.K., Allen J.E., Chen-Harris H., Zemla A., Vanier G., Mabery S., Torres C., Hullinger P., Slezak T.: The role of viral population diversity in adaptation of bovine coronavirus to new host environments. PLoS One 2013, 8, e52752. Borucki M.K. Allen J.E. Chen-Harris H. Zemla A. Vanier G. Mabery S. Torres C. Hullinger P. Slezak T. The role of viral population diversity in adaptation of bovine coronavirus to new host environments PLoS One 2013 8 e5275210.1371/journal.pone.0052752353875723308119Search in Google Scholar

13Bouwman K.M., Delpont M., Broszeit F., Berger R., Weerts E.A.W.S., Lucas M.-N., Delverdier M., Belkasmi S., Papanikolaou A., Boons G.-J., Guérin J.-L., de Vries R.P., Ducatez M.F., Verheije M.H.: Guinea fowl coronavirus diversity has phenotypic consequences for glycan and tissue binding. J Virol 2019, 93, e00067-00019. Bouwman K.M. Delpont M. Broszeit F. Berger R. Weerts E.A.W.S. Lucas M.-N. Delverdier M. Belkasmi S. Papanikolaou A. Boons G.-J. Guérin J.-L. de Vries R.P. Ducatez M.F. Verheije M.H. Guinea fowl coronavirus diversity has phenotypic consequences for glycan and tissue binding J Virol 2019 93 e00067 0001910.1128/JVI.00067-19649803730842318Search in Google Scholar

14Brown P.A., Touzain F., Briand F.X., Gouilh A.M., Courtillon C., Allee C., Lemaitre E., De Boisseson C., Blanchard Y., Eterradossi N.: First complete genome sequence of European turkey coronavirus suggests complex recombination history related with US turkey and guinea fowl coronaviruses. J Gen Virol 2016, 97, 110–120. Brown P.A. Touzain F. Briand F.X. Gouilh A.M. Courtillon C. Allee C. Lemaitre E. De Boisseson C. Blanchard Y. Eterradossi N. First complete genome sequence of European turkey coronavirus suggests complex recombination history related with US turkey and guinea fowl coronaviruses J Gen Virol 2016 97 110 12010.1099/jgv.0.000338708107426585962Search in Google Scholar

15Buonavoglia C., Decaro N., Martella V., Elia G., Campolo M., Desario C., Castagnaro M., Tempesta M.: Canine coronavirus highly pathogenic for dogs. Emerg Infect Dis 2006, 12, 492–494. Buonavoglia C. Decaro N. Martella V. Elia G. Campolo M. Desario C. Castagnaro M. Tempesta M. Canine coronavirus highly pathogenic for dogs Emerg Infect Dis 2006 12 492 49410.3201/eid1203.050839329144116704791Search in Google Scholar

16Cerioli M., Lavazza A.: 3.6. Viral enteritis of rabbits. In: Recent Advances in Rabbit Sciences edited by L. Maertens and P. Coudert, Institute for Agricultural and Fisheries Research (ILVO), Animal Science Unit, Melle, 2006, pp 181–186. Cerioli M. Lavazza A. 3.6. Viral enteritis of rabbits Recent Advances in Rabbit Sciences edited by MaertensL. and CoudertP. Institute for Agricultural and Fisheries Research (ILVO) Animal Science Unit Melle 2006 181 186Search in Google Scholar

17Changhee L.: Porcine epidemic diarrhea virus: An emerging and re-emerging epizootic swine virus. Virol J 2015, 12, 193. Changhee L. Porcine epidemic diarrhea virus: An emerging and re-emerging epizootic swine virus Virol J 2015 12 19310.1186/s12985-015-0421-2468728226689811Search in Google Scholar

18Cheever F.S., Daniels J.B., Pappenheimer A.M., Bailey O.T.: A murine virus (JHM) causing disseminated encephalomyelitis with extensive destruction of myelin. I. isolation and biological properties of the virus. J Exp Med 1949, 90, 181–194. Cheever F.S. Daniels J.B. Pappenheimer A.M. Bailey O.T. A murine virus (JHM) causing disseminated encephalomyelitis with extensive destruction of myelin I. isolation and biological properties of the virus. J Exp Med 1949 90 181 19410.1084/jem.90.3.181213590518137294Search in Google Scholar

19Chen Q., Gauger P.C., Stafne M.R., Thomas J.T., Madson D.M., Huang H., Zheng Y., Li G., Zhang J.: Pathogenesis comparison between the United States porcine epidemic diarrhoea virus prototype and S-INDEL-variant strains in conventional neonatal piglets. J Gen Virol 2016, 97, 1107–1121. Chen Q. Gauger P.C. Stafne M.R. Thomas J.T. Madson D.M. Huang H. Zheng Y. Li G. Zhang J. Pathogenesis comparison between the United States porcine epidemic diarrhoea virus prototype and S-INDEL-variant strains in conventional neonatal piglets J Gen Virol 2016 97 1107 112110.1099/jgv.0.00041926841768Search in Google Scholar

20Chu D.K., Leung C.Y., Gilbert M., Joyner P.H., Ng E.M., Tse T.M., Guan Y., Peiris J.S., Poon L.L.: Avian coronavirus in wild aquatic birds. J Virol 2011, 85, 12815–12820. Chu D.K. Leung C.Y. Gilbert M. Joyner P.H. Ng E.M. Tse T.M. Guan Y. Peiris J.S. Poon L.L. Avian coronavirus in wild aquatic birds J Virol 2011 85 12815 1282010.1128/JVI.05838-11320936521957308Search in Google Scholar

21Cook J.K.A., Jackwood M., Jones R.C.: The long view: 40 years of infectious bronchitis research. Avian Path 2012, 41, 239–250. Cook J.K.A. Jackwood M. Jones R.C. The long view: 40 years of infectious bronchitis research Avian Path 2012 41 239 25010.1080/03079457.2012.68043222702451Search in Google Scholar

22Corman V.M., Kallies R., Philipps H., Göpner G., Müller M.A., Eckerle I., Brünink S., Drosten C., Drexler J.F.: Characterization of a novel betacoronavirus related to Middle East respiratory syndrome coronavirus in European hedgehogs. J Virol 2014, 88, 717–724, doi: 10.1128/JVI.01600-13. Corman V.M. Kallies R. Philipps H. Göpner G. Müller M.A. Eckerle I. Brünink S. Drosten C. Drexler J.F. Characterization of a novel betacoronavirus related to Middle East respiratory syndrome coronavirus in European hedgehogs J Virol 2014 88 717 724 10.1128/JVI.01600-13391173424131722Open DOISearch in Google Scholar

23Corman V.M., Muth D., Niemeyer D., Drosten C.: Chapter eight - hosts and sources of endemic human coronaviruses. In: Advances in Virus Research edited by M. Kielian, T.C. Mettenleiter, and M.J. Roossinck, Academic Press, Waltham, pp. 163–188. Corman V.M. Muth D. Niemeyer D. Drosten C. Chapter eight - hosts and sources of endemic human coronaviruses Advances in Virus Research edited by KielianM. MettenleiterT.C. and RoossinckM.J. Academic Press Waltham 163 18810.1016/bs.aivir.2018.01.001Search in Google Scholar

24Cui J., Li F., Shi Z.-L.: Origin and evolution of pathogenic coronaviruses. Nat Rev Microbiol 2019, 17, 181–192. Cui J. Li F. Shi Z.-L. Origin and evolution of pathogenic coronaviruses Nat Rev Microbiol 2019 17 181 19210.1038/s41579-018-0118-9Search in Google Scholar

25de Groot R.J., Horzinek M.J.: Feline infectious peritonitis. In: The Coronaviridae edited by S.C. Siddell, Plenum, New York, 1995, pp. 293–309. de Groot R.J. Horzinek M.J. Feline infectious peritonitis The Coronaviridae edited by SiddellS.C. Plenum New York 1995 293 309Search in Google Scholar

26de Groot R.J., Ziebuhr J., Poon L.L., Woo P.C., Talbot P., Rottier P.J.M.: Revision of the family Coronaviridae. Taxonomic proposal of the Coronavirus Study Group to the ICTV Executive Committee. 2008. http://talk.ictvonline.org/media/p/1230.aspx de Groot R.J. Ziebuhr J. Poon L.L. Woo P.C. Talbot P. Rottier P.J.M. Revision of the family Coronaviridae Taxonomic proposal of the Coronavirus Study Group to the ICTV Executive Committee 2008 http://talk.ictvonline.org/media/p/1230.aspxSearch in Google Scholar

27de Wit J.J., Cook J.K.A., van der Heijden H.M.J.F.: Infectious bronchitis virus variants: a review of the history, current situation and control measures. Avian Path 2011, 40, 223–235. de Wit J.J. Cook J.K.A. van der Heijden H.M.J.F. Infectious bronchitis virus variants: a review of the history, current situation and control measures Avian Path 2011 40 223 23510.1080/03079457.2011.566260Search in Google Scholar

28Decaro N., Lorusso A.: Novel human coronavirus (SARS-CoV-2): A lesson from animal coronaviruses. Vet Microbiol 2020, 244, 108693. Decaro N. Lorusso A. Novel human coronavirus (SARS-CoV-2): A lesson from animal coronaviruses Vet Microbiol 2020 244 10869310.1016/j.vetmic.2020.108693Search in Google Scholar

29Drexler J.F., Corman V.M., Drosten C.: Ecology, evolution and classification of bat coronaviruses in the aftermath of SARS. Antiviral Res 2014, 101, 45–56. Drexler J.F. Corman V.M. Drosten C. Ecology, evolution and classification of bat coronaviruses in the aftermath of SARS Antiviral Res 2014 101 45 5610.1016/j.antiviral.2013.10.013Search in Google Scholar

30Ellis J.: What is the evidence that bovine coronavirus is a biologically significant respiratory pathogen in cattle? Can Vet J 2019, 60, 147–152. Ellis J. What is the evidence that bovine coronavirus is a biologically significant respiratory pathogen in cattle? Can Vet J 2019 60 147 152Search in Google Scholar

31Ellis J.A., McLean N., Hupaelo R., Haines D.M.: Detection of coronavirus in cases of tracheobronchitis in dogs: a retrospective study from 1971 to 2003. Can Vet J 2005, 46, 447–448. Ellis J.A. McLean N. Hupaelo R. Haines D.M. Detection of coronavirus in cases of tracheobronchitis in dogs: a retrospective study from 1971 to 2003 Can Vet J 2005 46 447 448Search in Google Scholar

32Erles K., Brownlie J.: Investigation into the causes of canine infectious respiratory disease: antibody responses to canine respiratory coronavirus and canine herpesvirus in two kennelled dog populations. Arch Virol 2005, 150, 1493–1504. Erles K. Brownlie J. Investigation into the causes of canine infectious respiratory disease: antibody responses to canine respiratory coronavirus and canine herpesvirus in two kennelled dog populations Arch Virol 2005 150 1493 150410.1007/s00705-005-0533-xSearch in Google Scholar

33Erles K., Shiu K.B., Brownlie J.: Isolation and sequence analysis of canine respiratory coronavirus. Virus Res 2007, 124, 78–87. Erles K. Shiu K.B. Brownlie J. Isolation and sequence analysis of canine respiratory coronavirus Virus Res 2007 124 78 8710.1016/j.virusres.2006.10.004Search in Google Scholar

34Erles K., Toomey C., Brooks H.W., Brownlie J.: Detection of a group 2 coronavirus in dogs with canine infectious respiratory disease. Virology 2003, 310, 216–223. Erles K. Toomey C. Brooks H.W. Brownlie J. Detection of a group 2 coronavirus in dogs with canine infectious respiratory disease Virology 2003 310 216 22310.1016/S0042-6822(03)00160-0Search in Google Scholar

35Fehr A.R., Perlman S.: Coronaviruses: an overview of their replication and pathogenesis. Methods Mol Biol 2015, 1282, 1–23. Fehr A.R. Perlman S. Coronaviruses: an overview of their replication and pathogenesis Methods Mol Biol 2015 1282 1 2310.1007/978-1-4939-2438-7_1436938525720466Search in Google Scholar

36Foley J.E., Poland A., Carlson J., Pedersen N.C.: Patterns of feline coronavirus infection and fecal shedding from cats in multiple-cat environments. J Am Vet Med Ass 1997, 210, 1307–1312. Foley J.E. Poland A. Carlson J. Pedersen N.C. Patterns of feline coronavirus infection and fecal shedding from cats in multiple-cat environments J Am Vet Med Ass 1997 210 1307 1312Search in Google Scholar

37Forni D., Cagliani R., Clerici M., Sironi M.: Molecular evolution of human coronavirus genomes. Trends Microbiol 2017, 25, 35–48. Forni D. Cagliani R. Clerici M. Sironi M. Molecular evolution of human coronavirus genomes Trends Microbiol 2017 25 35 4810.1016/j.tim.2016.09.001711121827743750Search in Google Scholar

38Ge X.-Y., Li J.-L., Yang X.-L., Chmura A.A., Zhu G., Epstein J.H., Mazet J.K., Hu B., Zhang W., Peng C., Zhang Y.-J., Luo C.-M., Tan B., Wang N., Zhu Y., Crameri G., Zhang S.-Y., Wang L.-F., Daszak P., Shi Z.-L.: Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor. Nature 2013, 503, 535–538. Ge X.-Y. Li J.-L. Yang X.-L. Chmura A.A. Zhu G. Epstein J.H. Mazet J.K. Hu B. Zhang W. Peng C. Zhang Y.-J. Luo C.-M. Tan B. Wang N. Zhu Y. Crameri G. Zhang S.-Y. Wang L.-F. Daszak P. Shi Z.-L. Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor Nature 2013 503 535 53810.1038/nature12711538986424172901Search in Google Scholar

39Gélinas A.M., Sasseville A.J., Dea S.: Identification of specific variations within the HE, S1, and ORF4 genes of bovine coronaviruses associated with enteric and respiratory diseases in dairy cattle. In: The Nidoviruses edited by S. Perlman, K.V. Holmes, Springer, Boston, 2001, pp. 63–67. Gélinas A.M. Sasseville A.J. Dea S. Identification of specific variations within the HE, S1, and ORF4 genes of bovine coronaviruses associated with enteric and respiratory diseases in dairy cattle The Nidoviruses edited by PerlmanS. HolmesK.V. Springer Boston 2001 63 6710.1007/978-1-4615-1325-4_911774537Search in Google Scholar

40Halfmann P.J., Hatta M., Chiba S., Maemura T., Fan S., Takeda M., Kinoshita N., Hattori S., Sakai-Tagawa Y., Iwatsuki-Horimoto K., Imai M., Kawaoka Y.: Transmission of SARS-CoV-2 in domestic cats. New Eng J Med 2020, doi: 10.1056/NEJMc2013400. Halfmann P.J. Hatta M. Chiba S. Maemura T. Fan S. Takeda M. Kinoshita N. Hattori S. Sakai-Tagawa Y. Iwatsuki-Horimoto K. Imai M. Kawaoka Y. Transmission of SARS-CoV-2 in domestic cats New Eng J Med 2020 10.1056/NEJMc201340032402157Open DOISearch in Google Scholar

41Hepojoki S., Lindh E., Vapalahti O., Huovilainen A.: Prevalence and genetic diversity of coronaviruses in wild birds, Finland. Infect Ecol Epidemiol 2017, 7, 1408360, doi: 10.1080/20008686.2017.1408360. Hepojoki S. Lindh E. Vapalahti O. Huovilainen A. Prevalence and genetic diversity of coronaviruses in wild birds, Finland Infect Ecol Epidemiol 2017 7 1408360 10.1080/20008686.2017.1408360636931030788065Open DOISearch in Google Scholar

42Herrewegh A.A., Vennema H., Horzinek M.C., Rottier P.J., de Groot R.J.: The molecular genetics of feline coronaviruses: comparative sequence analysis of the ORF7a/7b transcription unit of different biotypes. Virology 1995, 212, 622–631. Herrewegh A.A. Vennema H. Horzinek M.C. Rottier P.J. de Groot R.J. The molecular genetics of feline coronaviruses: comparative sequence analysis of the ORF7a/7b transcription unit of different biotypes Virology 1995 212 622 63110.1006/viro.1995.152071313617571432Search in Google Scholar

43Hoffmann M., Kleine-Weber H., Schroeder S., Krüger N., Herrler T., Erichsen S., Schiergens T.S., Herrler G., Wu N.-H., Nitsche A., Müller M.A., Drosten C., Pöhlmann S.: SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor. Cell 2020, 181, 271–280, e278, doi: 10.1016/j.cell.2020.02.052. Hoffmann M. Kleine-Weber H. Schroeder S. Krüger N. Herrler T. Erichsen S. Schiergens T.S. Herrler G. Wu N.-H. Nitsche A. Müller M.A. Drosten C. Pöhlmann S. SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor Cell 2020 181 271 280 e278 10.1016/j.cell.2020.02.052710262732142651Open DOISearch in Google Scholar

44Hohdatsu T., Nakamura M., Ishizuka Y., Yamada H., Koyama H.: A study on the mechanism of antibody-dependent enhancement of feline infectious peritonitis virus infection in feline macrophages by monoclonal antibodies. Arch Virol 1991, 120, 207–217. Hohdatsu T. Nakamura M. Ishizuka Y. Yamada H. Koyama H. A study on the mechanism of antibody-dependent enhancement of feline infectious peritonitis virus infection in feline macrophages by monoclonal antibodies Arch Virol 1991 120 207 21710.1007/BF0131047670871751659798Search in Google Scholar

45Hohdatsu T., Okada S., Koyama H.: Characterization of monoclonal antibodies against feline infectious peritonitis virus type II and antigenic relationship between feline, porcine, and canine coronaviruses. Arch Virol 1991, 117, 85–95. Hohdatsu T. Okada S. Koyama H. Characterization of monoclonal antibodies against feline infectious peritonitis virus type II and antigenic relationship between feline, porcine, and canine coronaviruses Arch Virol 1991 117 85 9510.1007/BF0131049470865861706593Search in Google Scholar

46Jackwood M.W., Boynton T.O., Hilt D.A., McKinley E.T., Kissinger J.C., Paterson A.H., Robertson J., Lemke C., McCall A.W., Williams S.M., Jackwood J.W., Byrd L.A.: Emergence of a group 3 coronavirus through recombination. Virology 2010, 398, 98–108. Jackwood M.W. Boynton T.O. Hilt D.A. McKinley E.T. Kissinger J.C. Paterson A.H. Robertson J. Lemke C. McCall A.W. Williams S.M. Jackwood J.W. Byrd L.A. Emergence of a group 3 coronavirus through recombination Virology 2010 398 98 10810.1016/j.virol.2009.11.044711190520022075Search in Google Scholar

47Jackwood M.W., de Wit S.: Infectious bronchitis. In: Diseases of Poultry edited by D.E. Swayne, Wiley-Blackwell. Hoboken, 2013, pp. 139–160. Jackwood M.W. de Wit S. Infectious bronchitis Diseases of Poultry edited by SwayneD.E. Wiley-Blackwell Hoboken 2013 139 16010.1002/9781119421481.ch4Search in Google Scholar

48Jackwood M.W., Hall D., Handel A.: Molecular evolution and emergence of avian gammacoronaviruses. Infect Gen Evol 2012, 12, 1305–1311. Jackwood M.W. Hall D. Handel A. Molecular evolution and emergence of avian gammacoronaviruses Infect Gen Evol 2012 12 1305 131110.1016/j.meegid.2012.05.003710606822609285Search in Google Scholar

49Jung K., Annamalai T., Lu Z., Saif L.J.: Comparative pathogenesis of US porcine epidemic diarrhea virus (PEDV) strain PC21A in conventional 9-day-old nursing piglets vs. 26-day-old weaned pigs. Vet Microbiol 2015, 178, 31–40. Jung K. Annamalai T. Lu Z. Saif L.J. Comparative pathogenesis of US porcine epidemic diarrhea virus (PEDV) strain PC21A in conventional 9-day-old nursing piglets vs 26-day-old weaned pigs. Vet Microbiol 2015 178 31 4010.1016/j.vetmic.2015.04.022711718125939885Search in Google Scholar

50Keha A., Xue L., Yan S., Yue H., Tang C.: Prevalence of a novel bovine coronavirus strain with a recombinant hemagglutinin/ esterase gene in dairy calves in China. Transbound Emerg Dis 2019, 66, 1971–1981. Keha A. Xue L. Yan S. Yue H. Tang C. Prevalence of a novel bovine coronavirus strain with a recombinant hemagglutinin/ esterase gene in dairy calves in China Transbound Emerg Dis 2019 66 1971 198110.1111/tbed.13228716854531077561Search in Google Scholar

51Kin N., Miszczak F., Diancourt L., Caro V., Moutou F., Vabret A., Ar Gouilh M.: Comparative molecular epidemiology of two closely related coronaviruses, bovine coronavirus (BCoV) and human coronavirus OC43 (HCoV-OC43), reveals a different evolutionary pattern. Infect Genet Evol 2016, 40, 186–191, doi: 10.1016/j.meegid.2016.03.006. Kin N. Miszczak F. Diancourt L. Caro V. Moutou F. Vabret A. Ar Gouilh M. Comparative molecular epidemiology of two closely related coronaviruses, bovine coronavirus (BCoV) and human coronavirus OC43 (HCoV-OC43), reveals a different evolutionary pattern Infect Genet Evol 2016 40 186 191 10.1016/j.meegid.2016.03.006710619926969241Open DOISearch in Google Scholar

52Laconi A., Listorti V., Franzo G., Cecchinato M., Naylor C., Lupini C., Catelli E.: Molecular characterization of whole genome sequence of infectious bronchitis virus 624I genotype confirms the close relationship with Q1 genotype. Transbound Emerg Dis 2019, 66, 207–216. Laconi A. Listorti V. Franzo G. Cecchinato M. Naylor C. Lupini C. Catelli E. Molecular characterization of whole genome sequence of infectious bronchitis virus 624I genotype confirms the close relationship with Q1 genotype Transbound Emerg Dis 2019 66 207 21610.1111/tbed.13000716853930126059Search in Google Scholar

53Latinne A., Hu B., Olival K.J., Zhu G., Zhang L., Li H., Chmura A.A., Field H.E., Zambrana-Torrelio C., Epstein J.H., Li B., Zhang W., Wang L.-F., Shi Z.-L., Daszak P.: Origin and cross-species transmission of bat coronaviruses in China. bioRxiv 2020, doi: 10/1101/2020.05.31.116061. Latinne A. Hu B. Olival K.J. Zhu G. Zhang L. Li H. Chmura A.A. Field H.E. Zambrana-Torrelio C. Epstein J.H. Li B. Zhang W. Wang L.-F. Shi Z.-L. Daszak P. Origin and cross-species transmission of bat coronaviruses in China bioRxiv 2020 10/1101/2020.05.31.116061Open DOISearch in Google Scholar

54Lau S.K., Woo P.C., Li K.S., Tsang A.K., Fan R.Y., Luk H.K., Cai J.P., Chan K.H., Zheng B.J., Wang M., Yuen K.Y.: Discovery of a novel coronavirus, China Rattus coronavirus HKU24, from Norway rats supports the murine origin of Betacoronavirus 1 and has implications for the ancestor of Betacoronavirus lineage A. J Virol 2015, 89, 3076–3092. Lau S.K. Woo P.C. Li K.S. Tsang A.K. Fan R.Y. Luk H.K. Cai J.P. Chan K.H. Zheng B.J. Wang M. Yuen K.Y. Discovery of a novel coronavirus, China Rattus coronavirus HKU24, from Norway rats supports the murine origin of Betacoronavirus 1 and has implications for the ancestor of Betacoronavirus lineage A J Virol 2015 89 3076 309210.1128/JVI.02420-14433752325552712Search in Google Scholar

55Lau S.K.P., Woo P.C.Y., Yip C.C.Y., Fan R.Y.Y., Huang Y., Wang M., Guo R., Lam C.S.F., Tsang A.K.L., Lai K.K.Y., Chan K.-H., Che X.-Y., Zheng B.-J., Yuen K.-Y.: Isolation and characterization of a novel Betacoronavirus subgroup A coronavirus, rabbit coronavirus HKU14, from domestic rabbits. J Virol 2012, 86, 5481–5496. Lau S.K.P. Woo P.C.Y. Yip C.C.Y. Fan R.Y.Y. Huang Y. Wang M. Guo R. Lam C.S.F. Tsang A.K.L. Lai K.K.Y. Chan K.-H. Che X.-Y. Zheng B.-J. Yuen K.-Y. Isolation and characterization of a novel Betacoronavirus subgroup A coronavirus, rabbit coronavirus HKU14, from domestic rabbits J Virol 2012 86 5481 549610.1128/JVI.06927-11334728222398294Search in Google Scholar

56Laude H., Van Reeth K., Pensaert M.: Porcine respiratory coronavirus: molecular features and virus-host interactions. Vet Res 1993, 24, 125–150. Laude H. Van Reeth K. Pensaert M. Porcine respiratory coronavirus: molecular features and virus-host interactions Vet Res 1993 24 125 150Search in Google Scholar

57Le Poder S.: Feline and canine coronaviruses: common genetic and pathobiological features. Adv Virol 2011, 2011, 609465, doi: 10.1155/2011/609465. Le Poder S. Feline and canine coronaviruses: common genetic and pathobiological features Adv Virol 2011 2011 609465 10.1155/2011/609465326530922312347Open DOISearch in Google Scholar

58Letko M., Marzi A., Munster V.: Functional assessment of cell entry and receptor usage for SARS-CoV-2 and other lineage B betacoronaviruses. Nat Microbiol 2020, 5, 562–569. Letko M. Marzi A. Munster V. Functional assessment of cell entry and receptor usage for SARS-CoV-2 and other lineage B betacoronaviruses Nat Microbiol 2020 5 562 56910.1038/s41564-020-0688-y709543032094589Search in Google Scholar

59Li F.: Evidence for a common evolutionary origin of coronavirus spike protein receptor-binding subunits. J Virol 2012, 86, 2856–2858. Li F. Evidence for a common evolutionary origin of coronavirus spike protein receptor-binding subunits J Virol 2012 86 2856 285810.1128/JVI.06882-11330224822205743Search in Google Scholar

60Li F.: Structure, function, and evolution of coronavirus spike proteins. Ann Rev Virol 2016, 3, 237–261. Li F. Structure, function, and evolution of coronavirus spike proteins Ann Rev Virol 2016 3 237 26110.1146/annurev-virology-110615-042301545796227578435Search in Google Scholar

61Li R., Qiao S., Zhang G.: Analysis of angiotensin-converting enzyme 2 (ACE2) from different species sheds some light on cross-species receptor usage of a novel coronavirus 2019-nCoV. J Infect 2020, 80, 469–496. Li R. Qiao S. Zhang G. Analysis of angiotensin-converting enzyme 2 (ACE2) from different species sheds some light on cross-species receptor usage of a novel coronavirus 2019-nCoV J Infect 2020 80 469 49610.1016/j.jinf.2020.02.013712762032092392Search in Google Scholar

62Li Z., He W., Lan Y., Zhao K., Lv X., Lu H., Ding N., Zhang J., Shi J., Shan C., Gao F.: The evidence of porcine hemagglutinating encephalomyelitis virus induced nonsuppurative encephalitis as the cause of death in piglets. Peer J 2016, 4, e2443–e2443. Li Z. He W. Lan Y. Zhao K. Lv X. Lu H. Ding N. Zhang J. Shi J. Shan C. Gao F. The evidence of porcine hemagglutinating encephalomyelitis virus induced nonsuppurative encephalitis as the cause of death in piglets Peer J 2016 4 e2443 e244310.7717/peerj.2443502878627672502Search in Google Scholar

63Liais E., Croville G., Mariette J., Delverdier M., Lucas M.N., Klopp C., Lluch J., Donnadieu C., Guy J.S., Corrand L., Ducatez M.F., Guerin J.L.: Novel avian coronavirus and fulminating disease in guinea fowl, France. Emerg Infect Dis 2014, 20, 105–108. Liais E. Croville G. Mariette J. Delverdier M. Lucas M.N. Klopp C. Lluch J. Donnadieu C. Guy J.S. Corrand L. Ducatez M.F. Guerin J.L. Novel avian coronavirus and fulminating disease in guinea fowl, France Emerg Infect Dis 2014 20 105 10810.3201/eid2001.130774388472324377831Search in Google Scholar

64Lu S., Chen Y., Qin K., Zhou J., Lou Y., Tan W.: Genetic and antigenic characterization of recombinant nucleocapsid proteins derived from canine coronavirus and canine respiratory coronavirus in China. Sci China Life Sci 2016, 59, 615–621. Lu S. Chen Y. Qin K. Zhou J. Lou Y. Tan W. Genetic and antigenic characterization of recombinant nucleocapsid proteins derived from canine coronavirus and canine respiratory coronavirus in China Sci China Life Sci 2016 59 615 62110.1007/s11427-016-5038-1708928227084706Search in Google Scholar

65Lv C., Xiao Y., Li X., Tian K.: Porcine epidemic diarrhea virus: current insights. Vir Adapt Treat 2016, 8, 1–12. Lv C. Xiao Y. Li X. Tian K. Porcine epidemic diarrhea virus: current insights Vir Adapt Treat 2016 8 1 1210.2147/VAAT.S107275Search in Google Scholar

66Ma G., Feng Y., Gao F., Wang J., Liu C., Li Y.: Biochemical and biophysical characterization of the transmissible gastroenteritis coronavirus fusion core. Biochem Biophys Res Commun 2005, 337, 1301–1307. Ma G. Feng Y. Gao F. Wang J. Liu C. Li Y. Biochemical and biophysical characterization of the transmissible gastroenteritis coronavirus fusion core Biochem Biophys Res Commun 2005 337 1301 130710.1016/j.bbrc.2005.09.189709286416236266Search in Google Scholar

67MacLean O.A., Lytras S., Singer J.B., Weaver S., Pond S.L.K., Robertson D.L.: Evidence of significant natural selection in the evolution of SARS-CoV-2 in bats, not humans. bioRxiv 2020, doi: 10/1101/2020.05.28.122366. MacLean O.A. Lytras S. Singer J.B. Weaver S. Pond S.L.K. Robertson D.L. Evidence of significant natural selection in the evolution of SARS-CoV-2 in bats not humans. bioRxiv 2020 10/1101/2020.05.28.122366Open DOISearch in Google Scholar

68Mandelik R., Sarvas M., Jackova A., Salamunova S., Novotny J., Vilcek S.: First outbreak with chimeric swine enteric coronavirus (SeCoV) on pig farms in Slovakia - lessons to learn. Acta Vet Hun 2018, 66, 488–492. Mandelik R. Sarvas M. Jackova A. Salamunova S. Novotny J. Vilcek S. First outbreak with chimeric swine enteric coronavirus (SeCoV) on pig farms in Slovakia - lessons to learn Acta Vet Hun 2018 66 488 49210.1556/004.2018.04330264613Search in Google Scholar

69Marandino A., Tomás G., Panzera Y., Greif G., Parodi-Talice A., Hernández M., Techera C., Hernández D., Pérez R.: Whole-genome characterization of Uruguayan strains of avian infectious bronchitis virus reveals extensive recombination between the two major South American lineages. Infect Gen Evol 2017, 54, 245–250. Marandino A. Tomás G. Panzera Y. Greif G. Parodi-Talice A. Hernández M. Techera C. Hernández D. Pérez R. Whole-genome characterization of Uruguayan strains of avian infectious bronchitis virus reveals extensive recombination between the two major South American lineages Infect Gen Evol 2017 54 245 25010.1016/j.meegid.2017.07.009Search in Google Scholar

70Martelli P., Lavazza A., Nigrelli A.D., Merialdi G., Alborali L.G., Pensaert M.B.: Epidemic of diarrhoea caused by porcine epidemic diarrhoea virus in Italy. Vet Rec 2008, 162, 307–310. Martelli P. Lavazza A. Nigrelli A.D. Merialdi G. Alborali L.G. Pensaert M.B. Epidemic of diarrhoea caused by porcine epidemic diarrhoea virus in Italy Vet Rec 2008 162 307 31010.1136/vr.162.10.307Search in Google Scholar

71Martina B.E.E., Haagmans B.L., Kuiken T., Fouchier R.A.M., Rimmelzwaan G.F., Van Amerongen G., Peiris J.S.M., Lim W., Osterhaus A.D.M.E.: Virology: SARS virus infection of cats and ferrets. Nature 2003, 425, 915–915. Martina B.E.E. Haagmans B.L. Kuiken T. Fouchier R.A.M. Rimmelzwaan G.F. Van Amerongen G. Peiris J.S.M. Lim W. Osterhaus A.D.M.E. Virology: SARS virus infection of cats and ferrets Nature 2003 425 915 91510.1038/425915aSearch in Google Scholar

72Masters P.S., Perlman S.: Coronaviridae. In: Fields virology edited by D.M. Knipe and P.M. Howley, Lippincot Williams & Wilkins, Philadelphia, 2013, pp. 825–858. Masters P.S. Perlman S. Coronaviridae Fields virology edited by KnipeD.M. and HowleyP.M. Lippincot Williams & Wilkins Philadelphia 2013 825 858Search in Google Scholar

73Mohd H.A., Al-Tawfiq J.A., Memish Z.A.: Middle East Respiratory Syndrome Coronavirus (MERS-CoV) origin and animal reservoir. Virol J 2016, 13, 87, doi: 10.1186/s12985-016-0544-0. Mohd H.A. Al-Tawfiq J.A. Memish Z.A. Middle East Respiratory Syndrome Coronavirus (MERS-CoV) origin and animal reservoir Virol J 2016 13 87 10.1186/s12985-016-0544-0Open DOISearch in Google Scholar

74Monchatre-Leroy E., Boué F., Boucher J.M., Renault C., Moutou F., Ar Gouilh M., Umhang G.: Identification of alpha and beta coronavirus in wildlife species in France: bats, rodents, rabbits, and hedgehogs. Viruses 2017, 9, 364. Monchatre-Leroy E. Boué F. Boucher J.M. Renault C. Moutou F. Ar Gouilh M. Umhang G. Identification of alpha and beta coronavirus in wildlife species in France: bats, rodents, rabbits, and hedgehogs Viruses 2017 9 36410.3390/v9120364Search in Google Scholar

75Morales R.G., Umandal A.C., Lantican C.A.: Emerging and reemerging diseases in Asia and the Pacific with special emphasis on porcine epidemic diarrhoea. In: 25th Conference of the OIE Regional Commission for Asia, the Far East and Oceania Queenstown, (New Zealand) 27–30 November 2007, pp. 185–189. Morales R.G. Umandal A.C. Lantican C.A. Emerging and reemerging diseases in Asia and the Pacific with special emphasis on porcine epidemic diarrhoea 25th Conference of the OIE Regional Commission for Asia, the Far East and Oceania Queenstown, (New Zealand) 27–30 November 2007 185 189Search in Google Scholar

76Motokawa K., Hohdatsu T., Hashimoto H., Koyama H.: Comparison of the amino acid sequence and phylogenetic analysis of the peplomer, integral membrane and nucleocapsid proteins of feline, canine and porcine coronaviruses. Microbiol Imm 1996, 40, 425–433. Motokawa K. Hohdatsu T. Hashimoto H. Koyama H. Comparison of the amino acid sequence and phylogenetic analysis of the peplomer, integral membrane and nucleocapsid proteins of feline, canine and porcine coronaviruses Microbiol Imm 1996 40 425 43310.1111/j.1348-0421.1996.tb01089.xSearch in Google Scholar

77Muradrasoli S., Balint A., Wahlgren J., Waldenstrom J., Belak S., Blomberg J., Olsen B.: Prevalence and phylogeny of coronaviruses in wild birds from the Bering Strait area (Beringia). PLoS One 2010, 5, e13640. Muradrasoli S. Balint A. Wahlgren J. Waldenstrom J. Belak S. Blomberg J. Olsen B. Prevalence and phylogeny of coronaviruses in wild birds from the Bering Strait area (Beringia) PLoS One 2010 5 e1364010.1371/journal.pone.0013640Search in Google Scholar

78Netherlands (Government of the): Government adopts advice to cull mink on infected farms. 3 June 2020. https://www.government.nl/latest/news/2020/06/09/government-adopts-advice-to-cull-mink-on-infected-farms Netherlands (Government of the): Government adopts advice to cull mink on infected farms 3 June 2020 https://www.government.nl/latest/news/2020/06/09/government-adopts-advice-to-cull-mink-on-infected-farmsSearch in Google Scholar

79Opressnig T.: Porcine epidemic diarrhea (PED) in Europe and strategies to control outbreaks. Jap J Vet Res. 2016, 64, 35–38. Opressnig T. Porcine epidemic diarrhea (PED) in Europe and strategies to control outbreaks Jap J Vet Res 2016 64 35 38Search in Google Scholar

80Pedersen N.C.: Virologic and immunologic aspects of feline infectious peritonitis virus infection. Adv Exp Med Biol 1987, 218, 529–550. Pedersen N.C. Virologic and immunologic aspects of feline infectious peritonitis virus infection Adv Exp Med Biol 1987 218 529 55010.1007/978-1-4684-1280-2_69Search in Google Scholar

81Pensaert M.: Transmissible gastroenteritis virus (respiratory variant). In: Virus infections of porcines [, edited by M. Pensaert, Elsevier Science Publishers, Amsterdam, 1989. Pensaert M. Transmissible gastroenteritis virus (respiratory variant) Virus infections of porcines [, edited by PensaertM. Elsevier Science Publishers Amsterdam 1989Search in Google Scholar

82Pensaert M., Callebaut P., Vergote J.: Isolation of a porcine respiratory, non-enteric coronavirus related to transmissible gastroenteritis. Vet Quart 1986, 8, 257–261. Pensaert M. Callebaut P. Vergote J. Isolation of a porcine respiratory, non-enteric coronavirus related to transmissible gastroenteritis Vet Quart 1986 8 257 26110.1080/01652176.1986.9694050Search in Google Scholar

83Pratelli A., Martella V., Decaro N., Tinelli A., Camero M., Cirone F., Elia G., Cavalli A., Corrente M., Greco G., Buonavoglia D., Gentile M., Tempesta M., Buonavoglia C.: Genetic diversity of a canine coronavirus detected in pups with diarrhoea in Italy. J Virol Methods 2003, 110, 9–17. Pratelli A. Martella V. Decaro N. Tinelli A. Camero M. Cirone F. Elia G. Cavalli A. Corrente M. Greco G. Buonavoglia D. Gentile M. Tempesta M. Buonavoglia C. Genetic diversity of a canine coronavirus detected in pups with diarrhoea in Italy J Virol Methods 2003 110 9 1710.1016/S0166-0934(03)00081-8Search in Google Scholar

84Priestnall S.L., Brownlie J., Dubovi E.J., Erles K.: Serological prevalence of canine respiratory coronavirus. Vet Microbiol 2006, 115, 43–53. Priestnall S.L. Brownlie J. Dubovi E.J. Erles K. Serological prevalence of canine respiratory coronavirus Vet Microbiol 2006 115 43 5310.1016/j.vetmic.2006.02.008711734916551493Search in Google Scholar

85Priestnall S.L., Pratelli A., Brownlie J., Erles K.: Serological prevalence of canine respiratory coronavirus in southern Italy and epidemiological relationship with canine enteric coronavirus. J Vet Diag Inv 2007, 19, 176–180. Priestnall S.L. Pratelli A. Brownlie J. Erles K. Serological prevalence of canine respiratory coronavirus in southern Italy and epidemiological relationship with canine enteric coronavirus J Vet Diag Inv 2007 19 176 18010.1177/10406387070190020617402612Search in Google Scholar

86Pusterla N., Vin R., Leutenegger C., Mittel L.D., Divers T.J.: Equine coronavirus: An emerging enteric virus of adult horses. Equine Vet Educ 2016, 28, 216–223. Pusterla N. Vin R. Leutenegger C. Mittel L.D. Divers T.J. Equine coronavirus: An emerging enteric virus of adult horses Equine Vet Educ 2016 28 216 22310.1111/eve.12453716371432313392Search in Google Scholar

87Rasmussen T.B., Boniotti M.B., Papetti A., Grasland B., Frossard J.-P., Dastjerdi A., Hulst M., Hanke D., Pohlmann A., Blome S., van der Poel W.H.M., Steinbach F., Blanchard Y., Lavazza A., Bøtner A., Belsham G.J.: Full-length genome sequences of porcine epidemic diarrhoea virus strain CV777; Use of NGS to analyse genomic and sub-genomic RNAs. PLoS One 2018, 13, e0193682, doi: 10.1371/journal.pone.0193682. Rasmussen T.B. Boniotti M.B. Papetti A. Grasland B. Frossard J.-P. Dastjerdi A. Hulst M. Hanke D. Pohlmann A. Blome S. van der Poel W.H.M. Steinbach F. Blanchard Y. Lavazza A. Bøtner A. Belsham G.J. Full-length genome sequences of porcine epidemic diarrhoea virus strain CV777; Use of NGS to analyse genomic and sub-genomic RNAs PLoS One 2018 13 e0193682 10.1371/journal.pone.0193682583226629494671Open DOISearch in Google Scholar

88Saif L.J., Jung K.: Comparative pathogenesis of bovine and porcine respiratory coronaviruses in the animal host species and SARS-CoV-2 in humans. J Clin Microbiol 2020, JCM.01355-20. doi: 10.1128/JCM.01355-20. Saif L.J. Jung K. Comparative pathogenesis of bovine and porcine respiratory coronaviruses in the animal host species and SARS-CoV-2 in humans J Clin Microbiol 2020 JCM.01355-20 10.1128/JCM.01355-20738354032522830Open DOISearch in Google Scholar

89Saif L.J., Pensaert M.B., Sestak K., Yeo S.-G., Jung K.: Coronaviruses. In: Diseases of swine edited by J.J. Zimmerman, L.A. Karriker, A. Ramirez, K.J. Schwartz, G.W. Stevenson, J. Zhang, Wiley-Blackwell, Ames, 2012, pp. 501–524. Saif L.J. Pensaert M.B. Sestak K. Yeo S.-G. Jung K. Coronaviruses Diseases of swine edited by ZimmermanJ.J. KarrikerL.A. RamirezA. SchwartzK.J. StevensonG.W. ZhangJ. Wiley-Blackwell Ames 2012 501 524Search in Google Scholar

90Saldanha I.F., Lawson B., Goharriz H., Rodriguez-Ramos Fernandez J., John S.K., Fooks A.R., Cunningham A.A., Johnson N., Horton D.L.: Extension of the known distribution of a novel clade C betacoronavirus in a wildlife host. Epidemiol Infect 2019, 147, e169. Saldanha I.F. Lawson B. Goharriz H. Rodriguez-Ramos Fernandez J. John S.K. Fooks A.R. Cunningham A.A. Johnson N. Horton D.L. Extension of the known distribution of a novel clade C betacoronavirus in a wildlife host Epidemiol Infect 2019 147 e16910.1017/S0950268819000207651846831063092Search in Google Scholar

91Salem E., Dhanasekaran V., Cassard H., Hause B., Maman S., Meyer G., Ducatez M.F.: Global transmission, spatial segregation, and recombination determine the long-term evolution and epidemiology of bovine coronaviruses. Viruses 2020, 12, 534, doi: 10.3390/v12050534. Salem E. Dhanasekaran V. Cassard H. Hause B. Maman S. Meyer G. Ducatez M.F. Global transmission, spatial segregation, and recombination determine the long-term evolution and epidemiology of bovine coronaviruses Viruses 2020 12 534 10.3390/v12050534729037932414076Open DOISearch in Google Scholar

92Sanchez C.M., Izeta A., Sanchez-Morgado J.M., Alonso S., Sola I., Balasch M., Plana-Duran J., Enjuanes L.: Targeted recombination demonstrates that the spike gene of transmissible gastroenteritis coronavirus is a determinant of its enteric tropism and virulence. J Virol 1999, 73, 7607–7618. Sanchez C.M. Izeta A. Sanchez-Morgado J.M. Alonso S. Sola I. Balasch M. Plana-Duran J. Enjuanes L. Targeted recombination demonstrates that the spike gene of transmissible gastroenteritis coronavirus is a determinant of its enteric tropism and virulence J Virol 1999 73 7607 761810.1128/JVI.73.9.7607-7618.199910428810438851Search in Google Scholar

93Schalk A.F.: An apparent new respiratory disease of baby chicks. J Am Vet Med Assoc 1931, 78, 413–422. Schalk A.F. An apparent new respiratory disease of baby chicks J Am Vet Med Assoc 1931 78 413 422Search in Google Scholar

94Shi J., Wen Z., Zhong G., Yang H., Wang C., Huang B., Liu R., He X., Shuai L., Sun Z., Zhao Y., Liu P., Liang L., Cui P., Wang J., Zhang X., Guan Y., Tan W., Wu G., Chen H., Bu Z.: Susceptibility of ferrets, cats, dogs, and other domesticated animals to SARS–coronavirus 2. Science 2020, 368, 1016–1020, doi: 10.1126/science.abb7015. Shi J. Wen Z. Zhong G. Yang H. Wang C. Huang B. Liu R. He X. Shuai L. Sun Z. Zhao Y. Liu P. Liang L. Cui P. Wang J. Zhang X. Guan Y. Tan W. Wu G. Chen H. Bu Z. Susceptibility of ferrets, cats, dogs, and other domesticated animals to SARS–coronavirus 2 Science 2020 368 1016 1020 10.1126/science.abb7015716439032269068Open DOISearch in Google Scholar

95Siddell S.G., Anderson R., Cavanagh D., Fujiwara K., Klenk H.D., Macnaughton M.R., Pensaert M., Stohlman S.A., Sturman L., van der Zeijst B.A.: Coronaviridae. Intervirology 1983, 20, 181–189. Siddell S.G. Anderson R. Cavanagh D. Fujiwara K. Klenk H.D. Macnaughton M.R. Pensaert M. Stohlman S.A. Sturman L. van der Zeijst B.A. Coronaviridae Intervirology 1983 20 181 18910.1159/00014939071826416654644Search in Google Scholar

96Song J.H., Shim J.K., Choi H.J.: Quercetin 7-rhamnoside reduces porcine epidemic diarrhea virus replication via independent pathway of viral induced reactive oxygen species. Virol J 2011, 8, 460, doi: 10.1186/1743-422X-8-460. Song J.H. Shim J.K. Choi H.J. Quercetin 7-rhamnoside reduces porcine epidemic diarrhea virus replication via independent pathway of viral induced reactive oxygen species Virol J 2011 8 460 10.1186/1743-422X-8-460Open DOISearch in Google Scholar

97Steinbach F., Dastjerdi A., Peake J., La Rocca S.A., Tobin F.P., Frossard J.-P., Williamson S.: A retrospective study detects a novel variant of porcine epidemic diarrhea virus in England in archived material from the year 2000. PeerJ 2016, 4, e2564, doi: 10.7717/peerj.2564. Steinbach F. Dastjerdi A. Peake J. La Rocca S.A. Tobin F.P. Frossard J.-P. Williamson S. A retrospective study detects a novel variant of porcine epidemic diarrhea virus in England in archived material from the year 2000 PeerJ 2016 4 e2564 10.7717/peerj.2564Open DOISearch in Google Scholar

98Su S., Wong G., Shi W., Liu J., Lai A.C.K., Zhou J., Liu W., Bi Y., Gao G.F.: Epidemiology, genetic recombination, and pathogenesis of coronaviruses. Trends Microbiol 2016, 24, 490–502. Su S. Wong G. Shi W. Liu J. Lai A.C.K. Zhou J. Liu W. Bi Y. Gao G.F. Epidemiology, genetic recombination, and pathogenesis of coronaviruses Trends Microbiol 2016 24 490 50210.1016/j.tim.2016.03.003Search in Google Scholar

99Suzuki T., Otake Y., Uchimoto S., Hasebe A., Goto Y.: Genomic characterization and phylogenetic classification of bovine coronaviruses through whole genome sequence analysis. Viruses 2020, 12, 183, doi: 10.3390/v12020183. Suzuki T. Otake Y. Uchimoto S. Hasebe A. Goto Y. Genomic characterization and phylogenetic classification of bovine coronaviruses through whole genome sequence analysis Viruses 2020 12 183 10.3390/v12020183Open DOISearch in Google Scholar

100Tang X., Wu C., Li X., Song Y., Yao X., Wu X., Duan Y., Zhang H., Wang Y., Qian Z., Cui J., Lu J.: On the origin and continuing evolution of SARS-CoV-2. Nat Sci Rev 2020, 7, 1012–1023. Tang X. Wu C. Li X. Song Y. Yao X. Wu X. Duan Y. Zhang H. Wang Y. Qian Z. Cui J. Lu J. On the origin and continuing evolution of SARS-CoV-2 Nat Sci Rev 2020 7 1012 102310.1093/nsr/nwaa036Search in Google Scholar

101Temmam S., Barbarino A., Maso D., Behillil S., Enouf V., Huon C., Jaraud A., Chevallier L., Backovic M., Pérot P., Verwaerde P., Tiret L., van der Werf S., Eloit M.: Absence of SARS-CoV-2 infection in cats and dogs in close contact with a cluster of COVID-19 patients in a veterinary campus. bioRxiv 2020, doi: 10/1101/2020.04.07.029090. Temmam S. Barbarino A. Maso D. Behillil S. Enouf V. Huon C. Jaraud A. Chevallier L. Backovic M. Pérot P. Verwaerde P. Tiret L. van der Werf S. Eloit M. Absence of SARS-CoV-2 infection in cats and dogs in close contact with a cluster of COVID-19 patients in a veterinary campus bioRxiv 2020 10/1101/2020.04.07.029090Open DOISearch in Google Scholar

102Tennant B.J., Gaskell R.M., Kelly D.F., Carter S.D., Gaskell C.J.: Canine coronavirus infection in the dog following oronasal inoculation. Res Vet Sci 1991, 51, 11–18. Tennant B.J. Gaskell R.M. Kelly D.F. Carter S.D. Gaskell C.J. Canine coronavirus infection in the dog following oronasal inoculation Res Vet Sci 1991 51 11 1810.1016/0034-5288(91)90023-HSearch in Google Scholar

103Tilocca B., Soggiu A., Musella V., Britti D., Sanguinetti M., Urbani A., Roncada P.: Molecular basis of COVID-19 relationships in different species: a one health perspective. Microbes Infect 2020, 22, 218–220. Tilocca B. Soggiu A. Musella V. Britti D. Sanguinetti M. Urbani A. Roncada P. Molecular basis of COVID-19 relationships in different species: a one health perspective Microbes Infect 2020 22 218 22010.1016/j.micinf.2020.03.002710264832194253Search in Google Scholar

104Tilocca B., Soggiu A., Sanguinetti M., Musella V., Britti D., Bonizzi L., Urbani A., Roncada P.: Comparative computational analysis of SARS-CoV-2 nucleocapsid protein epitopes in taxonomically related coronaviruses. Microbes Infect 2020, 22, 188–194. Tilocca B. Soggiu A. Sanguinetti M. Musella V. Britti D. Bonizzi L. Urbani A. Roncada P. Comparative computational analysis of SARS-CoV-2 nucleocapsid protein epitopes in taxonomically related coronaviruses Microbes Infect 2020 22 188 19410.1016/j.micinf.2020.04.002715624632302675Search in Google Scholar

105Tsoleridis T., Onianwa O., Horncastle E., Dayman E., Zhu M., Danjittrong T., Wachtl M., Behnke J.M., Chapman S., Strong V., Dobbs P., Ball J.K., Tarlinton R.E., McClure C.P.: Discovery of novel alphacoronaviruses in european rodents and shrews. Viruses 2016, 8, 84, doi: 10.3390/v8030084. Tsoleridis T. Onianwa O. Horncastle E. Dayman E. Zhu M. Danjittrong T. Wachtl M. Behnke J.M. Chapman S. Strong V. Dobbs P. Ball J.K. Tarlinton R.E. McClure C.P. Discovery of novel alphacoronaviruses in european rodents and shrews Viruses 2016 8 84 10.3390/v8030084481027427102167Open DOISearch in Google Scholar

106United States Department of Agriculture Animal and Plant Health Inspection Service: USDA Statement on the confirmation of COVID-19 in a tiger in New York. April 6, 2020. https://www.aphis.usda.gov/aphis/newsroom/news/sa_by_date/sa-2020/ny-zoo-covid-19 United States Department of Agriculture Animal and Plant Health Inspection Service: USDA Statement on the confirmation of COVID-19 in a tiger in New York April 6 2020 https://www.aphis.usda.gov/aphis/newsroom/news/sa_by_date/sa-2020/ny-zoo-covid-19Search in Google Scholar

107Valastro V., Holmes E.C., Britton P., Fusaro A., Jackwood M.W., Cattoli G., Monne I.: S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification. Infect Genet Evol 2016, 39, 349–364. Valastro V. Holmes E.C. Britton P. Fusaro A. Jackwood M.W. Cattoli G. Monne I. S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification Infect Genet Evol 2016 39 349 36410.1016/j.meegid.2016.02.015717298026883378Search in Google Scholar

108Vennema H., Poland A., Foley J., Pedersen N.C.: Feline infectious peritonitis viruses arise by mutation from endemic feline enteric coronaviruses. Virology 1998, 243, 150–157. Vennema H. Poland A. Foley J. Pedersen N.C. Feline infectious peritonitis viruses arise by mutation from endemic feline enteric coronaviruses Virology 1998 243 150 15710.1006/viro.1998.904571317599527924Search in Google Scholar

109Vijgen L., Keyaerts E., Moës E., Thoelen I., Wollants E., Lemey P., Vandamme A.M., Van Ranst M.: Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event. J Virol 2005, 79, 1595–1604. Vijgen L. Keyaerts E. Moës E. Thoelen I. Wollants E. Lemey P. Vandamme A.M. Van Ranst M. Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event J Virol 2005 79 1595 160410.1128/JVI.79.3.1595-1604.200554410715650185Search in Google Scholar

110Vlasova A.N., Wang Q., Jung K., Langel S.N., Malik Y.S., Saif L.J.: Porcine coronaviruses. Emerg Trans Animal Virol 2020, 79–110. Vlasova A.N. Wang Q. Jung K. Langel S.N. Malik Y.S. Saif L.J. Porcine coronaviruses Emerg Trans Animal Virol 2020 79 11010.1007/978-981-15-0402-0_4Search in Google Scholar

111Wang L.F., Eaton B.T.: Bats, civets and the emergence of SARS. Curr Top Microbiol Immunol 2007, 315, 325–344. Wang L.F. Eaton B.T. Bats, civets and the emergence of SARS Curr Top Microbiol Immunol 2007 315 325 34410.1007/978-3-540-70962-6_13712008817848070Search in Google Scholar

112Wang Q., Vlasova A.N., Kenney S.P., Saif L.J.: Emerging and re-emerging coronaviruses in pigs. Curr Opinion Virol 2019, 34, 39–49. Wang Q. Vlasova A.N. Kenney S.P. Saif L.J. Emerging and re-emerging coronaviruses in pigs Curr Opinion Virol 2019 34 39 4910.1016/j.coviro.2018.12.001710285230654269Search in Google Scholar

113Wang W., Lin X.D., Guo W.P., Zhou R.H., Wang M.R., Wang C.Q., Ge S., Mei S.H., Li M.H., Shi M., Holmes E.C., Zhang Y.Z.: Discovery, diversity and evolution of novel coronaviruses sampled from rodents in China. Virology 2015, 474, 19–27. Wang W. Lin X.D. Guo W.P. Zhou R.H. Wang M.R. Wang C.Q. Ge S. Mei S.H. Li M.H. Shi M. Holmes E.C. Zhang Y.Z. Discovery, diversity and evolution of novel coronaviruses sampled from rodents in China Virology 2015 474 19 2710.1016/j.virol.2014.10.017711205725463600Search in Google Scholar

114Wickramasinghe I.N.A., de Vries R.P., Weerts E.A.W.S., van Beurden S.J., Peng W., McBride R., Ducatez M., Guy J., Brown P., Eterradossi N., Grone A., Paulson J.C., Verheijea M.H.: Novel receptor specificity of avian gammacoronaviruses that cause enteritis. J Virol 2015, 89, 8783–8792. Wickramasinghe I.N.A. de Vries R.P. Weerts E.A.W.S. van Beurden S.J. Peng W. McBride R. Ducatez M. Guy J. Brown P. Eterradossi N. Grone A. Paulson J.C. Verheijea M.H. Novel receptor specificity of avian gammacoronaviruses that cause enteritis J Virol 2015 89 8783 879210.1128/JVI.00745-15452409026063435Search in Google Scholar

115Wille M., Harvey E., Shi M., Gonzalez-Acuna D., Holmes E.C., Hurt A.C.: Sustained RNA virome diversity in Antarctic penguins and their ticks. Isme J 2020, 14, 1768–1782. Wille M. Harvey E. Shi M. Gonzalez-Acuna D. Holmes E.C. Hurt A.C. Sustained RNA virome diversity in Antarctic penguins and their ticks Isme J 2020 14 1768 178210.1038/s41396-020-0643-1730517632286545Search in Google Scholar

116Wille M., Muradrasoli S., Nilsson A., Jarhult J.D.: High prevalence and putative lineage maintenance of avian coronaviruses in Scandinavian waterfowl. PLoS One 2016, 11, e150198, doi: 10.1371/journal.pone.0150198. Wille M. Muradrasoli S. Nilsson A. Jarhult J.D. High prevalence and putative lineage maintenance of avian coronaviruses in Scandinavian waterfowl PLoS One 2016 11 e150198 10.1371/journal.pone.0150198477742026938459Open DOISearch in Google Scholar

117Woo P.C., Lau S.K., Huang Y., Yuen K.Y.: Coronavirus diversity, phylogeny and interspecies jumping. Exp Biol Med (Maywood) 2009, 234, 1117–1127. Woo P.C. Lau S.K. Huang Y. Yuen K.Y. Coronavirus diversity, phylogeny and interspecies jumping Exp Biol Med (Maywood) 2009 234 1117 112710.3181/0903-MR-9419546349Search in Google Scholar

118World Organisation for Animal Health (OIE): Terrestrial Animal Health Code 28^th Edition, Paris, 2019. http://www.oie.int/en/international-standard-setting/terrestrial-code/access-online/ World Organisation for Animal Health (OIE): Terrestrial Animal Health Code 28^th Edition Paris 2019 http://www.oie.int/en/international-standard-setting/terrestrial-code/access-online/Search in Google Scholar

119World Organisation for Animal Health (OIE): Considerations for sampling, testing, and reporting of SARS-CoV-2 in animals, Paris, 2020. http://www.oie.int/fileadmin/Home/eng/Our_scientific_expertise/docs/pdf/COV-19/Sampling_Testing_and_Reporting_of_SARS-CoV-2_in_animals_final_7May_2020.pdf World Organisation for Animal Health (OIE): Considerations for sampling, testing, and reporting of SARS-CoV-2 in animals Paris 2020 http://www.oie.int/fileadmin/Home/eng/Our_scientific_expertise/docs/pdf/COV-19/Sampling_Testing_and_Reporting_of_SARS-CoV-2_in_animals_final_7May_2020.pdfSearch in Google Scholar

120Yachi A., Mochizuki M.: Survey of dogs in Japan for group 2 canine coronavirus infection. J Clin Microbiol 2006, 44, 2615–2618. Yachi A. Mochizuki M. Survey of dogs in Japan for group 2 canine coronavirus infection J Clin Microbiol 2006 44 2615 261810.1128/JCM.02397-05148946916825396Search in Google Scholar

121Zeng Q., Langereis M.A., van Vliet A.L.W., Huizinga E.G., de Groot R.J.: Structure of coronavirus hemagglutinin-esterase offers insight into corona and influenza virus evolution. Proc Natl Acad Sci U S A 2008, 105, 9065–9069. Zeng Q. Langereis M.A. van Vliet A.L.W. Huizinga E.G. de Groot R.J. Structure of coronavirus hemagglutinin-esterase offers insight into corona and influenza virus evolution Proc Natl Acad Sci U S A 2008 105 9065 906910.1073/pnas.0800502105244936518550812Search in Google Scholar

122Zhang J., Guy J.S., Snijder E.J., Denniston D.A., Timoney P.J., Balasuriya U.B.: Genomic characterization of equine coronavirus. Virology 2007, 369, 92–104. Zhang J. Guy J.S. Snijder E.J. Denniston D.A. Timoney P.J. Balasuriya U.B. Genomic characterization of equine coronavirus Virology 2007 369 92 10410.1016/j.virol.2007.06.035710328717706262Search in Google Scholar

123Zhang J.Q.: Porcine deltacoronavirus: Overview of infection dynamics, diagnostic methods, prevalence and genetic evolution. Virus Res 2016, 226, 71–84. Zhang J.Q. Porcine deltacoronavirus: Overview of infection dynamics, diagnostic methods, prevalence and genetic evolution Virus Res 2016 226 71 8410.1016/j.virusres.2016.05.028711455527270129Search in Google Scholar

124Zhang Q., Zhang H., Huang K., Yang Y., Hui X., Gao J., He X., Li C., Gong W., Zhang Y., Peng C., Gao X., Chen H., Zou Z., Shi Z., Jin M.: SARS-CoV-2 neutralizing serum antibodies in cats: a serological investigation. bioRxiv 2020, doi: 10/1101/2020.04.01.021196. Zhang Q. Zhang H. Huang K. Yang Y. Hui X. Gao J. He X. Li C. Gong W. Zhang Y. Peng C. Gao X. Chen H. Zou Z. Shi Z. Jin M. SARS-CoV-2 neutralizing serum antibodies in cats: a serological investigation bioRxiv 2020 10/1101/2020.04.01.021196Open DOISearch in Google Scholar

125Zhang X.M., Herbst W., Kousoulas K.G., Storz J.: Biological and genetic characterization of a hemagglutinating coronavirus isolated from a diarrhoeic child. J Med Virol 1994, 44, 152–161. Zhang X.M. Herbst W. Kousoulas K.G. Storz J. Biological and genetic characterization of a hemagglutinating coronavirus isolated from a diarrhoeic child J Med Virol 1994 44 152 16110.1002/jmv.189044020771665977852955Search in Google Scholar

126Zhao J., Chen D., Szabla R., Zheng M., Li G., Du P., Zheng S., Li X., Song C., Li R., Guo J.-T., Junop M., Zeng H., Lin H.: Broad and differential animal ACE2 receptor usage by SARS-CoV-2. bioRxiv 2020, doi: 10/1101/2020.04.19.048710 Zhao J. Chen D. Szabla R. Zheng M. Li G. Du P. Zheng S. Li X. Song C. Li R. Guo J.-T. Junop M. Zeng H. Lin H. Broad and differential animal ACE2 receptor usage by SARS-CoV-2 bioRxiv 2020 10/1101/2020.04.19.048710Open DOISearch in Google Scholar

127Zhou L., Li Q.N., Su J.N., Chen G.H., Wu Z.X., Luo Y., Wu R.T., Sun Y., Lan T., Ma J.Y.: The re-emerging of SADS-CoV infection in pig herds in Southern China. Transbound Emerg Dis 2019, 66, 2180–2183. Zhou L. Li Q.N. Su J.N. Chen G.H. Wu Z.X. Luo Y. Wu R.T. Sun Y. Lan T. Ma J.Y. The re-emerging of SADS-CoV infection in pig herds in Southern China Transbound Emerg Dis 2019 66 2180 218310.1111/tbed.13270716856231207129Search in Google Scholar

128Zhou P., Fan H., Lan T., Yang X.-L., Shi W.-F., Zhang W., Zhu Y., Zhang Y.-W., Xie Q.-M., Mani S., Zheng X.-S., Li B., Li J.-M., Guo H., Pei G.-Q., An X.-P., Chen J.-W., Zhou L., Mai K.-J., Wu Z.-X., Li D., Anderson D.E., Zhang L.-B., Li S.-Y., Mi Z.-Q., He T.-T., Cong F., Guo P.-J., Huang R., Luo Y., Liu X.-L., Chen J., Huang Y., Sun Q., Zhang X.-L.-L., Wang Y.-Y., Xing S.-Z., Chen Y.-S., Sun Y., Li J., Daszak P., Wang L.-F., Shi Z.-L., Tong Y.-G., Ma J.-Y.: Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin. Nature 2018, 556, 255–258. Zhou P. Fan H. Lan T. Yang X.-L. Shi W.-F. Zhang W. Zhu Y. Zhang Y.-W. Xie Q.-M. Mani S. Zheng X.-S. Li B. Li J.-M. Guo H. Pei G.-Q. An X.-P. Chen J.-W. Zhou L. Mai K.-J. Wu Z.-X. Li D. Anderson D.E. Zhang L.-B. Li S.-Y. Mi Z.-Q. He T.-T. Cong F. Guo P.-J. Huang R. Luo Y. Liu X.-L. Chen J. Huang Y. Sun Q. Zhang X.-L.-L. Wang Y.-Y. Xing S.-Z. Chen Y.-S. Sun Y. Li J. Daszak P. Wang L.-F. Shi Z.-L. Tong Y.-G. Ma J.-Y. Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin Nature 2018 556 255 25810.1038/s41586-018-0010-9709498329618817Search in Google Scholar

129Zhou P., Yang X.-L., Wang X.-G., Hu B., Zhang L., Zhang W., Si H.-R., Zhu Y., Li B., Huang C.-L., Chen H.-D., Chen J., Luo Y., Guo H., Jiang R.-D., Liu M.-Q., Chen Y., Shen X.-R., Wang X., Zheng X.-S., Zhao K., Chen Q.-J., Deng F., Liu L.-L., Yan B., Zhan F.-X., Wang Y.-Y., Xiao G.-F., Shi Z.-L.: A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 2020, 579, 270–273. Zhou P. Yang X.-L. Wang X.-G. Hu B. Zhang L. Zhang W. Si H.-R. Zhu Y. Li B. Huang C.-L. Chen H.-D. Chen J. Luo Y. Guo H. Jiang R.-D. Liu M.-Q. Chen Y. Shen X.-R. Wang X. Zheng X.-S. Zhao K. Chen Q.-J. Deng F. Liu L.-L. Yan B. Zhan F.-X. Wang Y.-Y. Xiao G.-F. Shi Z.-L. A pneumonia outbreak associated with a new coronavirus of probable bat origin Nature 2020 579 270 27310.1038/s41586-020-2012-7709541832015507Search in Google Scholar

130Zhuang Q.Y., Wang K.C., Liu S., Hou G.Y., Jiang W.M., Wang S.C., Li J.P., Yu J.M., Chen J.M.: Genomic analysis and surveillance of the coronavirus dominant in ducks in China. PLoS One 2015, 10, e0129256, doi: 10.1371/journal.pone.0129256. Zhuang Q.Y. Wang K.C. Liu S. Hou G.Y. Jiang W.M. Wang S.C. Li J.P. Yu J.M. Chen J.M. Genomic analysis and surveillance of the coronavirus dominant in ducks in China PLoS One 2015 10 e0129256 10.1371/journal.pone.0129256445980926053682Open DOISearch in Google Scholar