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Carbapenem-resistant Pseudomonas aeruginosa originating from farm animals and people in Egypt


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Fig. 1

Phylogenetic analysis of the toxA gene. The toxA genes sequenced in this study are marked with red solid dots. All other sequences are derived from the NCBI GenBank database
Phylogenetic analysis of the toxA gene. The toxA genes sequenced in this study are marked with red solid dots. All other sequences are derived from the NCBI GenBank database

Occurrence among different sources of P. aeruginosa, carbapenem-resistant P. aeruginosa (CRPA), and exotoxin A in the tested samples

Origin of sample Number of samples Number of samples positive for P. aeruginosa Occurrence of P. aeruginosa (%) Number of samples positive for CRPA Occurrence of CRPA (%) Exotoxin A
Buffalo 50 20 40 12 60 40 strains out of 50 (80%)
Cattle 50 17 34 10 59
Livestock drinking water 30 3 10 2 67
Human 50 10 20 7 70

List of primers used in this study

Gene Sequence (5'–3') Size (bp) References
blaKPC F: ATGTCACTGTATCGCCGTCT 882
R: TTTTCAGAGCCT TACTGCCC
blaOXA-48 F: TTGGTGGCATCGATTATCGG 743
R: GAGCACTTCTTTTGTGATGGC Hamza et al (9).
blaNDM F: GGTTTGGCGATCTGGTTTTC 621
R: CGGAATGGCTCATCACGATC
toxA F: GACAACGCCCTCAGCATCACCAGC 396
R: CGCTGGCCCATTCGCTCCAGCGCT Xu et al (28).
eISSN:
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Language:
English
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Journal Subjects:
Life Sciences, Molecular Biology, Microbiology and Virology, other, Medicine, Veterinary Medicine