In-silico analysis of mt-CO1 gene of Taenia hydatigena sheep isolates

Adwan, K., Jayousi, A., Abuseir, S., Abbasi, I., Adwan, G., Jarrar, N. (2018): Genetic diversity of Taenia hydatigena in the northern part of the West Bank, Palestine as determined by mitochondrial DNA sequences. Acta Parasitol., 63(2): 299–303. DOI: 10.1515/ ap-2018-0034Adwan K. Jayousi A. Abuseir S. Abbasi I. Adwan G. Jarrar N. 2018 Genetic diversity of Taenia hydatigena in the northern part of the West Bank, Palestine as determined by mitochondrial DNA sequences Acta Parasitol 632 299 303 10.1515/ap-2018-003429654682Open DOISearch in Google Scholar

Aydin, A. (2003): Hakkari Belediye mezbahasında kesilen hayvanlarda paraziter fauna tespit çalışmaları [Parasitic fauna detection studies in animals slaughtered in Hakkari Municipality Slaughterhouse] PhD Thesis, Turkey, Van: Yüzüncü Yıl University Institute of Health Science. (In Turkish)Aydin A. 2003 Hakkari Belediye mezbahasında kesilen hayvanlarda paraziter fauna tespit çalışmaları [Parasitic fauna detection studies in animals slaughtered in Hakkari Municipality Slaughterhouse] PhD Thesis Turkey, Van Yüzüncü Yıl University Institute of Health Science (In Turkish)Search in Google Scholar

Bıswal, D.K., Chatterjee, A., Bhattacharya, A., Tandon, V. (2014): The mitochondrial genome of Paragonimus westermani (Kerbert, 1878), the Indian isolate of the lung fluke representative of the family Paragonimidae (Trematoda). Peer J., 2: 484. DOI: 10.7717/ peerj.484Bıswal D.K. Chatterjee A. Bhattacharya A. Tandon V. 2014 The mitochondrial genome of Paragonimus westermani (Kerbert, 1878), the Indian isolate of the lung fluke representative of the family Paragonimidae (Trematoda) Peer J 2 484 10.7717/peerj.484413767025165620Open DOISearch in Google Scholar

Boufana, B., Scala, A., Lahmar, S., Poıntıng, S., Craıg, P. S., Dessì, G., Zıdda, A., Pıpıa, A. P., Varcasıa, A. (2015a): A preliminary investigation into the genetic variation and population structure of Taenia hydatigena from Sardinia, Italy. Vet. Parasitol., 214(1-2): 67–74. DOI: 10.1016/j.vetpar.2015.08.003Boufana B. Scala A. Lahmar S. Poıntıng S. Craıg P. S. Dessì G. Zıdda A. Pıpıa A. P. Varcasıa A. 2015a A preliminary investigation into the genetic variation and population structure of Taenia hydatigena from Sardinia, Italy Vet. Parasitol 2141-2 67 74 10.1016/j.vetpar.2015.08.00326296591Open DOISearch in Google Scholar

Boufana, B., Lett, W., Lahmar, S., Griffiths, A., Jenkins, D., Buishi, I., Engliez, S., Alrefadi, M., Eljaki, A., Elmestiri, F. (2015b): Canine echinococcosis: genetic diversity of Echinococcus granulosus sensu stricto (ss) from definitive hosts. J. Helminthol., 89(6): 689–698. DOI: 10.1017/S0022149X15000395Boufana B. Lett W. Lahmar S. Griffiths A. Jenkins D. Buishi I. Engliez S. Alrefadi M. Eljaki A. Elmestiri F. 2015b Canine echinococcosis: genetic diversity of Echinococcus granulosus sensu stricto (ss) from definitive hosts J. Helminthol 896 689 698 10.1017/S0022149X1500039526442707Open DOISearch in Google Scholar

Bowles, J., Blair, D., McManus, D.P. (1992): Genetic variants within the genus Echinococcus identified by mitochondrial DNA sequencing. Mol. Biochem. Parasitol., 54(2): 165–173. DOI: 10.1016/0166-6851(92)90109-WBowles J. Blair D. McManus D.P. 1992 Genetic variants within the genus Echinococcus identified by mitochondrial DNA sequencing Mol. Biochem. Parasitol 542 165 173 10.1016/0166-6851(92)90109-W1435857Open DOISearch in Google Scholar

Chembensofu, M., Mwape, K., Van Damme, I., Hobbs, E., Phiri, I., Masuku, M., Zulu, G., Colston, A., Willingham, A., Devleesschauwer, B. (2017): Re-visiting the detection of porcine cysticercosis based on full carcass dissections of naturally Taenia solium infected pigs. Parasit Vectors, 10(1): 572. DOI: 10.1016/j.vetpar.2008.02.002Chembensofu M. Mwape K. Van Damme I. Hobbs E. Phiri I. Masuku M. Zulu G. Colston A. Willingham A. Devleesschauwer B. 2017 Re-visiting the detection of porcine cysticercosis based on full carcass dissections of naturally Taenia solium infected pigs Parasit Vectors 101 572 10.1016/j.vetpar.2008.02.00218346853Open DOISearch in Google Scholar

Deger, S., Bicek, K. (2005): Tatvan belediye mezbahasında kesilen koyun, keçi ve sığırlarda larval cestodiosis [Larval cestodiosis in sheep, goats and cattle slaughtered in Tatvan municipal slaughterhouse]. Van Vet. J., 16(1): 45–47 (In Turkish)Deger S. Bicek K. 2005 Tatvan belediye mezbahasında kesilen koyun, keçi ve sığırlarda larval cestodiosis [Larval cestodiosis in sheep, goats and cattle slaughtered in Tatvan municipal slaughterhouse] Van Vet. J 161 45 47 (In Turkish)Search in Google Scholar

Deger, S., Bicek, K., Gul, A., Eraslan, E. (2001): Van yöresinde koyun keçi ve sığırlarda, Cysticercus tenuicollis’ in yaygınlığı [Prevalence of Cysticercus tenuicollis in sheep, goats and cattle in Van province of Turkey]. Van Health Sci J., 7(1-2): 95–97. (In Turkish) Harandi, M., Moazezi, S., Saba, M., Grimm, F., Kamyabi, H., Sheikhzadeh, F., Sharifi, I., Deplazes, P. (2011): Sonographical and serological survey of human cystic echinococcosis and analysis of risk factors associated with seroconversion in rural communities of Kerman, Iran. Zoonoses Public Health, 58(8): 582–588. DOI: 10.1111/j.1863-2378.2011.01407.xDeger S. Bicek K. Gul A. Eraslan E. 2001 Van yöresinde koyun keçi ve sığırlarda, Cysticercus tenuicollis’ in yaygınlığı [Prevalence of Cysticercus tenuicollis in sheep, goats and cattle in Van province of Turkey] Van Health Sci J 71-2 95 97 (In Turkish) Harandi, M., Moazezi, S., Saba, M., Grimm, F., Kamyabi, H., Sheikhzadeh, F., Sharifi, I., Deplazes, P. (2011): Sonographical and serological survey of human cystic echinococcosis and analysis of risk factors associated with seroconversion in rural communities of Kerman, Iran. Zoonoses Public Health, 58(8): 582–588 10.1111/j.1863-2378.2011.01407.x21824361Open DOISearch in Google Scholar

Jıa, W., Yan, H., Lou, Z., Nı, X., Dyachenko, V., Lı, H., Lıttle-wood, D.T.J. (2012). Mitochondrial genes and genomes support a cryptic species of tapeworm within Taenia taeniaeformis Acta Trop, 123(3): 154–163. DOI: 10.1016/j.actatropica.2012.04.006Jıa W. Yan H. Lou Z. Nı X. Dyachenko V. Lı H. Lıttle-wood D.T.J. 2012 Mitochondrial genes and genomes support a cryptic species of tapeworm within Taenia taeniaeformis Acta Trop 1233 154–163 10.1016/j.actatropica.2012.04.00622569565Open DOISearch in Google Scholar

Kara, M., Gicik, Y., Sari, B., Bulut, H., Arslan, M. (2009): A slaughterhouse study on prevalence of some helminths of cattle and sheep in Malatya Province, Turkey. J. Anim. Vet. Adv., 8(11): 2200–2205Kara M. Gicik Y. Sari B. Bulut H. Arslan M. 2009 A slaughterhouse study on prevalence of some helminths of cattle and sheep in Malatya Province, Turkey J. Anim. Vet. Adv 811 2200 2205Search in Google Scholar

Kaufmann, J. (2013). Parasitic infections of domestic animals: a diagnostic manual. Birkhäuser.Kaufmann J. 2013 Parasitic infections of domestic animals: a diagnostic manual BirkhäuserSearch in Google Scholar

Kinkar, L., Laurimäe, T., Balkaya, I., Casulli, A., Zait, H., Irshadullah, M., Sharbatkhori, M., Mirhendi, H., Rostami-Nejad, M., Ponce-Gordo, F. (2018): Genetic diversity and phylogeography of the elusive, but epidemiologically important Echinococcus granulosus sensu stricto genotype G3. Parasitology, 145(12): 1613–1622. DOI: 10.1017/S0031182018000549Kinkar L. Laurimäe T. Balkaya I. Casulli A. Zait H. Irshadullah M. Sharbatkhori M. Mirhendi H. Rostami-Nejad M. Ponce-Gordo F. 2018 Genetic diversity and phylogeography of the elusive, but epidemiologically important Echinococcus granulosus sensu stricto genotype G3 Parasitology 14512 1613 1622 10.1017/S003118201800054929661261Open DOISearch in Google Scholar

Kornelıussen, T.S., Moltke, I., Albrechtsen, A., Nıelsen, R. (2013): Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data. BMC Bioinformatics, 14(1): 1–14Kornelıussen T.S. Moltke I. Albrechtsen A. Nıelsen R. 2013 Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data BMC Bioinformatics 141 1–1410.1186/1471-2105-14-289401503424088262Search in Google Scholar

Kumar, S., Stecher, G., Li, M., Knyaz, C., Tamura, K. (2018): MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol, 35(6): 1547–1549. DOI: 10.1093/molbev/msy096Kumar S. Stecher G. Li M. Knyaz C. Tamura K. 2018 MEGA X: molecular evolutionary genetics analysis across computing platforms Mol Biol Evol 356 1547 1549 10.1093/molbev/msy096596755329722887Open DOISearch in Google Scholar

Leigh, J., Bryant, D., Steel, M. (2016): PopArt .Version 1.7Leigh J. Bryant D. Steel M. 2016 PopArt Version 17Search in Google Scholar

Mellau, L., Nonga, H., Karimuribo, E. (2010): A slaughterhouse survey of liver lesions in slaughtered cattle, sheep and goats at Arusha, Tanzania. Res. J. Vet. Sci., 3(3): 179–188Mellau L. Nonga H. Karimuribo E. 2010 A slaughterhouse survey of liver lesions in slaughtered cattle, sheep and goats at Arusha, Tanzania Res. J. Vet. Sci 33 179 18810.3923/rjvs.2010.179.188Search in Google Scholar

Lıu, G.H., Lı, C., Lı, J.Y., Zhou, DH., Xıong, R.C., Lın, R.Q., Zhu, X.Q. (2012): Characterization of the complete mitochondrial genome sequence of Spirometra erinaceieuropaei (Cestoda: Diphyllobothriidae) from China. Int J Biol Sci., 8(5): 640. DOI: 10.7150/ ijbs.4096Lıu G.H. Lı C. Lı J.Y. Zhou DH. Xıong R.C. Lın R.Q. Zhu X.Q. 2012 Characterization of the complete mitochondrial genome sequence of Spirometra erinaceieuropaei (Cestoda: Diphyllobothriidae) from China Int J Biol Sci 85 640 10.7150/ijbs.4096334160522553464Open DOISearch in Google Scholar

Lıu, G.H., Yan, H.B., Otranto, D., Wang, X.Y., Zhao, G.H., Jıa, W.Z., Zhu, X.Q. (2014): Dicrocoelium chinensis and Dicrocoelium dendriticum (Trematoda: Digenea) are distinct lancet fluke species based on mitochondrial and nuclear ribosomal DNA sequences. Mol Phylogenet Evol, 79, 325–331. DOI: 10.1016/j.ympev.2014.07.002Lıu G.H. Yan H.B. Otranto D. Wang X.Y. Zhao G.H. Jıa W.Z. Zhu X.Q. 2014 Dicrocoelium chinensis and Dicrocoelium dendriticum (Trematoda: Digenea) are distinct lancet fluke species based on mitochondrial and nuclear ribosomal DNA sequences Mol Phylogenet Evol 79 325–331 10.1016/j.ympev.2014.07.00225016202Open DOISearch in Google Scholar

Nakao, M., Sako, Y., Ito, A. (2003): Isolation of polymorphic microsatellite loci from the tapeworm Echinococcus multilocularis Infect. Genet. Evol., 3(3): 159–163. DOI: 10.1016/S1567-1348(03)00070-4Nakao M. Sako Y. Ito A. 2003 Isolation of polymorphic microsatellite loci from the tapeworm Echinococcus multilocularis Infect. Genet. Evol 33 159 163 10.1016/S1567-1348(03)00070-414522179Open DOISearch in Google Scholar

Nimbalkar, R., Shinde, S., Kamtikar, V., Muley, S. (2011): Study on Taenia hydatigena in the slaughtered sheep (Ovis bharal) and goats (Capra hircus) in Maharashtra, India. Glob. Vet., 6(4): 374–377Nimbalkar R. Shinde S. Kamtikar V. Muley S. 2011 Study on Taenia hydatigena in the slaughtered sheep (Ovis bharal) and goats (Capra hircus) in Maharashtra, India Glob. Vet 64 374 377Search in Google Scholar

Nourani, H., Pirali Kheirabadi, K., Rajabi, H., Banitalebi, A. (2010): Research note an unusual migration of Taenia hydatigena larval in a lamb. Trop. Biomed., 27(3): 651–656Nourani H. Pirali Kheirabadi K. Rajabi H. Banitalebi A. 2010 Research note an unusual migration of Taenia hydatigena larval in a lamb Trop. Biomed 273 651 656Search in Google Scholar

Rostami, S., Salavati, R., Beech, R., Babaei, Z., Sharbatkhori, M., Baneshi, M., Hajialilo, E., Shad, H., Harandi, M. (2015): Molecular and morphological characterization of the tapeworm Taenia hydatigena (Pallas, 1766) in sheep from Iran. J. Helminthol., 89(2): 150–157. DOI: 10.1017/S0022149X13000667Rostami S. Salavati R. Beech R. Babaei Z. Sharbatkhori M. Baneshi M. Hajialilo E. Shad H. Harandi M. 2015 Molecular and morphological characterization of the tapeworm Taenia hydatigena (Pallas, 1766) in sheep from Iran J. Helminthol 892 150 157 10.1017/S0022149X1300066724103709Open DOISearch in Google Scholar

Rozas, J., Ferrer-Mata, A., Sánchez-Delbarrio, J.C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S.E., Sánchez-Gracia, A. (2017): DnaSP 6: DNA sequence polymorphism analysis of large data sets. Mol. Biol. Evol., 34(12): 3299–3302. DOI: 10.1093/molbev/msx248Rozas J. Ferrer-Mata A. Sánchez-Delbarrio J.C. Guirao-Rico S. Librado P. Ramos-Onsins S.E. Sánchez-Gracia A. 2017 DnaSP 6: DNA sequence polymorphism analysis of large data sets Mol. Biol. Evol 3412 3299 3302 10.1093/molbev/msx24829029172Open DOISearch in Google Scholar

Saarma, U., Jogisalu, I., Moks, E., Varcasia, A., Lavikainen, A., Ok-sanen, A., Simsek, S., Andresiuk, V., Denegri, G., González, L. M. (2009): A novel phylogeny for the genus Echinococcus, based on nuclear data, challenges relationships based on mitochondrial evidence. Parasitology, 136(3): 317–328. DOI: 10.1017/ S0031182008005453Saarma U. Jogisalu I. Moks E. Varcasia A. Lavikainen A. Ok-sanen A. Simsek S. Andresiuk V. Denegri G. González L. M. 2009 A novel phylogeny for the genus Echinococcus, based on nuclear data, challenges relationships based on mitochondrial evidence Parasitology 1363 317 328 10.1017/S003118200800545319154654Open DOISearch in Google Scholar

Samuel, W., Zewde, G.G. (2010): Prevalence, risk factors, and distribution of Cysticercus tenuicollis in visceral organs of slaughtered sheep and goats in central Ethiopia. Trop Anim Health Prod, 42(6): 1049–1051. DOI: 10.1007/s11250-010-9537-ySamuel W. Zewde G.G. 2010 Prevalence, risk factors, and distribution of Cysticercus tenuicollis in visceral organs of slaughtered sheep and goats in central Ethiopia Trop Anim Health Prod 426 1049 1051 10.1007/s11250-010-9537-y20204508Open DOISearch in Google Scholar

Saulawa, M., Magaji, A., Faleke, O., Mohammed, A., Kudi, A., Musawa, A., Sada, A., Ugboma, A., Akawu, B., Sidi, S. (2011): Prevalence of Cysticercus tenuicollis cysts in sheep slaughtered at Sokoto abattoir, Sokoto state, Nigeria. Sokoto J. Vet. Sci., 9(2): 24–27Saulawa M. Magaji A. Faleke O. Mohammed A. Kudi A. Musawa A. Sada A. Ugboma A. Akawu B. Sidi S. 2011 Prevalence of Cysticercus tenuicollis cysts in sheep slaughtered at Sokoto abattoir, Sokoto state, Nigeria Sokoto J. Vet. Sci 92 24 27Search in Google Scholar

Scala, A., Pipia, A. P., Dore, F., Sanna, G., Tamponi, C., Marrosu, R., Bandino, E., Carmona, C., Boufana, B., Varcasia, A. (2015): Epidemiological updates and economic losses due to Taenia hydatigena in sheep from Sardinia, Italy. Parasitol. Res., 114(8): 3137–3143. DOI: 10.1007/s00436-015-4532-x.Scala A. Pipia A. P. Dore F. Sanna G. Tamponi C. Marrosu R. Bandino E. Carmona C. Boufana B. Varcasia A. 2015 Epidemiological updates and economic losses due to Taenia hydatigena in sheep from Sardinia, Italy Parasitol. Res 1148 3137 3143 10.1007/s00436-015-4532-x25968992Open DOISearch in Google Scholar

Scala, A., Urrai, G., Varcasia, A., Nicolussi, P., Mulas, M., Goddi, L., Pipia, A. P., Sanna, G., Genchi, M., Bandino, E. (2016): Acute visceral cysticercosis by Taenia hydatigena in lambs and treatment with praziquantel. J. Helminthol., 90(1): 113–116. DOI: 10.1017/ S0022149X14000601Scala A. Urrai G. Varcasia A. Nicolussi P. Mulas M. Goddi L. Pipia A. P. Sanna G. Genchi M. Bandino E. 2016 Acute visceral cysticercosis by Taenia hydatigena in lambs and treatment with praziquantel J. Helminthol 901 113 116 10.1017/S0022149X1400060125120032Open DOISearch in Google Scholar

Sissay, M.M., Uggla, A., Waller, P.J. (2008): Prevalence and seasonal incidence of larval and adult cestode infections of sheep and goats in eastern Ethiopia. Trop Anim Health Prod, 40(6): 387–394. DOI: 10.1007/s11250-007-9096-zSissay M.M. Uggla A. Waller P.J. 2008 Prevalence and seasonal incidence of larval and adult cestode infections of sheep and goats in eastern Ethiopia Trop Anim Health Prod 406 387 394 10.1007/s11250-007-9096-z18575964Open DOISearch in Google Scholar

Sultan, K., Desoukey, A., Elsiefy, M., Elbahy, N. (2010). An abattoir study on the prevalence of some gastrointestinal helminths of sheep in Gharbia Governorate, Egypt. Glob. Vet., 5(2): 84–87Sultan K. Desoukey A. Elsiefy M. Elbahy N. 2010 An abattoir study on the prevalence of some gastrointestinal helminths of sheep in Gharbia Governorate, Egypt Glob. Vet 52 84 87Search in Google Scholar

Taylor, M., Coop, R., Wall, R. (2007): Veterinary Parasitology. 3rd edn. Blackwell Publishing. UK.Taylor M. Coop R. Wall R. 2007 Veterinary Parasitology. 3rd edn Blackwell Publishing UKSearch in Google Scholar

Utuk, A. E., Pıskın, F. C. (2012): Molecular detection and characterization of goat isolate of Taenia hydatigena in Turkey. Sci World J, 2012: 962732. DOI: 10.1100/2012/962732Utuk A. E. Pıskın F. C. 2012 Molecular detection and characterization of goat isolate of Taenia hydatigena in Turkey Sci World J 2012 962732 10.1100/2012/962732331757122500144Open DOISearch in Google Scholar

Varcasia, A., Tanda, B., Giobbe, M., Solinas, C., Pipia, A.P., Malgor, R., Carmona, C., Garippa, G., Scala, A. (2011): Cystic echinococcosis in Sardinia: farmers’ knowledge and dog infection in sheep farms. Vet. Parasitol., 181(2-4): 335–340. DOI: 10.1016/j.vetpar.2011.05.006Varcasia A. Tanda B. Giobbe M. Solinas C. Pipia A.P. Malgor R. Carmona C. Garippa G. Scala A. 2011 Cystic echinococcosis in Sardinia: farmers’ knowledge and dog infection in sheep farms Vet. Parasitol 1812-4 335 340 10.1016/j.vetpar.2011.05.00621645971Open DOISearch in Google Scholar

Wondimu, A., Abera, D., Hailu, Y. (2011): A study on the prevalence, distribution and economic importance of Cysticercus tenuicollis in visceral organs of small ruminants slaughtered at an abattoir in Ethiopia. J. Vet. Med. Anim. Health., 3(5): 67–74Wondimu A. Abera D. Hailu Y. 2011 A study on the prevalence, distribution and economic importance of Cysticercus tenuicollis in visceral organs of small ruminants slaughtered at an abattoir in Ethiopia J. Vet. Med. Anim. Health 35 67 74Search in Google Scholar