[Abu-Elheiga L., Wakil S.J. (2005). Mutant mice lacking acetyl-CoA carboxylase 1 are embryonically lethal. Proc. Natl. Acad. Sci. USA, 102: 12011–12016.]Search in Google Scholar
[Anders S., Huber W. (2010). Differential expression analysis for sequence count data. Genome Biol., 11: 1–12.]Search in Google Scholar
[Anders S., Pyl P.T., Huber W. (2015). HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics, 31: 166–169.]Search in Google Scholar
[Armentano L.E., Grummer R.R., Bertics S.J., Skaar T.C., Donkin S.S. (1991). Effects of energy balance on hepatic capacity for oleate and propionate metabolism and triglyceride secretion. J. Dairy Sci., 74: 132–139.]Search in Google Scholar
[Bourneuf E., Hérault F., Chicault C., Carré W., Assaf S., Monnier A., Mottier S., Lagarrigue S., Douaire M., Mosser J. (2006). Microarray analysis of differential gene expression in the liver of lean and fat chickens. Gene, 372: 162–170.]Search in Google Scholar
[Buitenhuis B., Janss L.L., Poulsen N.A., Larsen L.B., Larsen M.K., Sørensen P. (2014). Genome-wide association and biological pathway analysis for milk-fat composition in Danish Holstein and Danish Jersey cattle. BMC Genomics, 15: 1112.]Search in Google Scholar
[Cahaner A., Leenstra F. (1992). Effects of high temperature on growth and efficiency of male and female broilers from lines selected for high weight gain, favorable feed conversion, and high or low fat content. Poultry Sci., 71: 1237–1250.]Search in Google Scholar
[Chen C.J., Cheng F.C., Liao S.L., Chen W.Y., Lin N.N., Kuo J.S. (2000). Effects of naloxone on lactate, pyruvate metabolism and antioxidant enzyme activity in rat cerebral ischemia/reperfusion. Neurosci. Lett., 287: 113–116.]Search in Google Scholar
[Cheng C., Tu W., Chen C., Chan H., Chen C., Chen H., Tang P., Lee Y.P., Chen S., Huang S. (2018). Functional genomics study of acute heat stress response in the small yellow follicles of layer-type chickens. Sci. Rep., 8: 1320.]Search in Google Scholar
[Chirala S.S., Hua C., Matzuk M., Abu-Elheiga L., Mao J., Mahon K., Finegold M., Wakil S.J. (2003). Fatty acid synthesis is essential in embryonic development: fatty acid synthase null mutants and most of the heterozygotes die in utero. Proc. Natl. Acad. Sci. USA, 100: 6358–6363.]Search in Google Scholar
[Coble D.J., Fleming D., Persia M.E., Ashwell C.M., Rothschild M.F., Schmidt C.J., Lamont S.J. (2014). RNA-seq analysis of broiler liver transcriptome reveals novel responses to high ambient temperature. BMC Genomics, 15: 1084.]Search in Google Scholar
[Cui H.X., Zheng M.Q., Liu R.R., Zhao G.P., Chen J.L., Wen J. (2012). Liver dominant expression of fatty acid synthase (FAS) gene in two chicken breeds during intramuscular-fat development. Mol. Biol. Rep., 39: 3479.]Search in Google Scholar
[Deeb N., Cahaner A. (2002). Genotype-by-environment interaction with broiler genotypes differing in growth rate. 3. Growth rate and water consumption of broiler progeny from weight-selected versus nonselected parents under normal and high ambient temperatures. Poultry Sci., 81: 293–301.]Search in Google Scholar
[Diraison F., Dusserre E., Vidal H., Sothier M., Beylot M. (2002). Increased hepatic lipogenesis but decreased expression of lipogenic gene in adipose tissue in human obesity. Am. J. Physiol.-Endocrinol. Metab., 282: 46–51.]Search in Google Scholar
[Dodhia S., Celis K., Aylward A., Cai Y., Fontana M.E., Trespalacios A., Hoffman D.C., Alfonso H.O., Eisig S.B., Su G.H. (2017). ACSS2 gene variant associated with cleft lip and palate in two independent Hispanic populations. Laryngoscope, 127: 336–339.]Search in Google Scholar
[Fan C.Y., Pan J., Chu R., Lee D., Kluckman K.D., Usuda N., Singh I., Yeldandi A.V., Rao M.S., Maeda N. (1996). Hepatocellular and hepatic peroxisomal alterations in mice with a disrupted peroxisomal fatty acyl-coenzyme A oxidase gene. J. Biol. Chem., 271: 24698–24710.]Search in Google Scholar
[Fujino T., Sato H., Cho Y., Yamamoto T.T. (2000). Molecular characterization of short-chain acyl-CoA synthetases. In: Lipoprotein Metabolism and Atherogenesis, Kita T., Yokode M. (eds). Springer, Tokyo, Japan.]Search in Google Scholar
[Goh W.Q., Ow G.S., Kuznetsov V.A., Chong S., Lim Y.P. (2015). DLAT subunit of the pyruvate dehydrogenase complex is upregulated in gastric cancer-implications in cancer therapy. Am. J. Transl. Res., 7: 1140–1151.]Search in Google Scholar
[Hashimoto T., Fujita T., Usuda N., Cook W., Qi C., Peters J.M., Gonzalez F.J., Yeldandi A.V., Rao M.S., Reddy J.K. (1999). Peroxisomal and mitochondrial fatty acid beta-oxidation in mice nullizygous for both peroxisome proliferator-activated receptor alpha and peroxisomal fatty acyl-CoA oxidase. Genotype correlation with fatty liver phenotype. J. Biol. Chem., 274: 19228–19236.]Search in Google Scholar
[Hillgartner F.B., Charron T., Chesnut K.A. (1996). Alterations in nutritional status regulate acetyl-CoA carboxylase expression in avian liver by a transcriptional mechanism. Biochem. J., 319: 263–268.]Search in Google Scholar
[Huang S. (2017). Upregulation of TLR4 mRNA expression levels in broiler chiekens under acute heat stress. Braz. J. Poult. Sci., 19: 87–94.]Search in Google Scholar
[Hubbard A., Zhang X., Jastrebski S., Singh A., Schmidt C. (2018). Understanding the liver under heat stress with statistical learning: a multiomics computational approach. BioRxiv, 340125.10.1101/340125]Search in Google Scholar
[Ingram C. (2014). AMP-forming acetyl-CoA synthetases in Archaea show unexpected diversity in substrate utilization. Archaea, 2: 95–107.]Search in Google Scholar
[Jastrebski S.F., Lamont S.J., Schmidt C.J. (2017). Chicken hepatic response to chronic heat stress using integrated transcriptome and metabolome analysis. PloS One, 12: e0181900.]Search in Google Scholar
[Jia Z., Moulson C.L., Pei Z., Miner J.H., Watkins P.A. (2007). FATP4 is the principal very long-chain fatty acyl-CoA synthetase in skin fibroblasts. J. Biol. Chem., 21: A607–A608.]Search in Google Scholar
[Jump D.B., Torres-Gonzalez M., Olson L.K. (2011). Soraphen A, an inhibitor of acetyl CoA carboxylase activity, interferes with fatty acid elongation. Biochem. Pharmacol., 81: 649–660.]Search in Google Scholar
[Kanehisa M., Goto S. (1999). KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res., 28: 27–30.]Search in Google Scholar
[Kim D., Langmead B., Salzberg S.L. (2015). HISAT: a fast spliced aligner with low memory requirements. Nat. Methods., 12: 357–360.]Search in Google Scholar
[Kim J.H., Lewin T.M., Coleman R.A. (2001). Expression and characterization of recombinant rat Acyl-CoA synthetases 1, 4, and 5. Selective inhibition by triacsin C and thiazolidinediones. J. Biol. Chem., 276: 24667.]Search in Google Scholar
[Korasick D.A., Wyatt J.W., Luo M., Laciak A.R., Ruddraraju K., Gates K.S., Henzl M.T., Tanner J.J. (2017). Importance of the C-terminus of aldehyde dehydrogenase 7a1 for oligomerization and catalytic activity. Bioinformatics, 56: 5910–5919.]Search in Google Scholar
[Lam T.K., Gutierrez-Juarez R., Pocai A., Rossetti L. (2005). Regulation of blood glucose by hypothalamic pyruvate metabolism. Science, 309: 943–947.]Search in Google Scholar
[Lan X., Hsieh J.C.F., Schmidt C.J., Zhu Q., Lamont S.J. (2016). Liver transcriptome response to hyperthermic stress in three distinct chicken lines. BMC Genomics, 17: 955.]Search in Google Scholar
[Lin H., Decuypere E., Buyse J. (2006). Acute heat stress induces oxidative stress in broiler chickens. Comp. Biochem. Physiol. A: Mol. Integr. Physiol., 144: 11–17.]Search in Google Scholar
[Livak K.J., Schmittgen T.D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods, 25: 402–408.]Search in Google Scholar
[Lu Q., Wen J., Zhang H. (2007). Effect of chronic heat exposure on fat deposition and meat quality in two genetic types of chicken. Poultry Sci., 86: 1059–1064.]Search in Google Scholar
[Macdonald M.J. (1995). Feasibility of a mitochondrial pyruvate malate shuttle in pancreatic islets. Further implication of cytosolic NADPH in insulin secretion. J. Biol. Chem., 270: 20051–20058.]Search in Google Scholar
[Mao X., Cai T., Olyarchuk J.G., Wei L. (2005). Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics, 21: 3787–3793.]Search in Google Scholar
[Marszalek J.R., Kitidis C., Dirusso C.C., Lodish H.F. (2005). Long-chain acyl-CoA synthetase 6 preferentially promotes DHA metabolism. J. Biol. Chem., 280: 10817–10826.]Search in Google Scholar
[May J.D., Deaton J.W., Branton S.L. (1987). Body temperature of acclimated broilers during exposure to high temperature. Poultry Sci., 66: 378–380.]Search in Google Scholar
[Mckay J.C., Barton N.F., Koerhuis A.N.M., Mcadam J. (2000). Editors. The challenge of genetic change in the broiler chicken. Edinburgh, UK, British Society of Animal Science Press, 86 pp.]Search in Google Scholar
[Mildner A.M., Clarke S.D. (1991). Porcine fatty acid synthase: cloning of a complementary DNA, tissue distribution of its mRNA and suppression of expression by somatotropin and dietary protein. J. Nutr., 121: 900.]Search in Google Scholar
[Misra P., Reddy J.K. (2014). Peroxisome proliferator-activated receptor-α activation and excess energy burning in hepatocarcinogenesis. Biochimie. 98: 63–74.]Search in Google Scholar
[Nogalska A., Swierczynski J. (2001). The age-related differences in obese and fatty acid synthase gene expression in white adipose tissue of rat. Biochim. Biophys. Acta Mol. Cell Biol. Lipids, 1533: 73–80.]Search in Google Scholar
[Resnyk C.W., Carré W., Wang X., Porter T.E., Simon J., Bihan-Duval E.L., Duclos M.J., Aggrey S.E., Cogburn L.A. (2017). Transcriptional analysis of abdominal fat in chickens divergently selected on bodyweight at two ages reveals novel mechanisms controlling adiposity: validating visceral adipose tissue as a dynamic endocrine and metabolic organ. BMC Genomics, 18: 626.]Search in Google Scholar
[Rimoldi S., Lasagna E., Sarti F.M., Marelli S.P., Cozzi M.C., Bernardini G., Terova G. (2015). Expression profile of six stress-related genes and productive performances of fast and slow growing broiler strains reared under heat stress conditions. Meta Gene, 6: 17–25.]Search in Google Scholar
[Rui C., Min X., Nagati J.S., Hogg R.T., Alok D., Gerard R.D., Garcia J.A. (2015). The acetate/ACSS2 switch regulates HIF-2 stress signaling in the tumor cell microenvironment. Plos One, 10: e0116515.]Search in Google Scholar
[Schmid G.M., Converset V., Walter N., Sennitt M.V., Leung K.Y., Byers H., Ward M., Hochstrasser D.F., Cawthorne M.A., Sanchez J.C. (2010). Effect of high-fat diet on the expression of proteins in muscle, adipose tissues, and liver of C57BL/6 mice. Proteomics, 4: 2270–2282.]Search in Google Scholar
[Schoonjans K., Staels B., Auwerx J. (1996). Role of the peroxisome proliferator-activated receptor (PPAR) in mediating the effects of fibrates and fatty acids on gene expression. J. Lipid Res., 37: 907–925.]Search in Google Scholar
[Schurch N.J., Schofield P., Gierliński M., Cole C., Sherstnev A., Singh V., Wrobel N., Gharbi K., Simpson G.G., Owen-Hughes T., Blaxter M., Barton G.J. (2016). How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use? RNA, 22: 839–851.10.1261/rna.053959.115487861127022035]Search in Google Scholar
[Sládek N.E. (2010). Human aldehyde dehydrogenases: Potential pathological, pharmacological, and toxicological impact. J. Biochem. Mol. Toxicol., 17: 7–23.]Search in Google Scholar
[Sohail M.U., Hume M.E., Byrd J.A., Nisbet D.J., Ijaz A., Sohail A., Shabbir M.Z., Rehman H. (2012). Effect of supplementation of prebiotic mannan-oligosaccharides and probiotic mixture on growth performance of broilers subjected to chronic heat stress. Poultry Sci., 91: 2235–2240.]Search in Google Scholar
[Suzuki H., Kawarabayasi Y., Kondo J., Abe T., Nishikawa K., Kimura S., Hashimoto T., Yamamoto T. (1990). Structure and regulation of rat long-chain acyl-CoA synthetase. J. Biol. Chem., 265: 8681–8685.]Search in Google Scholar
[Takai T., Yokoyama C., Wada K., Tanabe T. (1988). Primary structure of chicken liver acetyl-CoA carboxylase deduced from cDNA sequence. J. Biol. Chem., 263: 2651–2657.]Search in Google Scholar
[Tang X., Meng Q., Gao J., Zhang S., Zhang H., Zhang M. (2015). Label-free quantitative analysis of changes in broiler liver proteins under heat stress using SWATH-MS technology. Sci. Rep., 5: 15119.]Search in Google Scholar
[Tong L. (2005). Acetyl-coenzyme A carboxylase: crucial metabolic enzyme and attractive target for drug discovery. Cell. Mol. Life Sci., 62: 1784–1803.]Search in Google Scholar
[Trapnell C., Williams B.A., Pertea G., Mortazavi A., Kwan G., Van Baren M.J., Salzberg S.L., Wold B.J., Pachter L. (2010). Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol., 28: 511–515.]Search in Google Scholar
[Van Horn C.G., Caviglia J.M., Li L.O., Wang S., Granger D.A., Coleman R.A. (2005). Characterization of recombinant long-chain rat acyl-CoA synthetase isoforms 3 and 6: identification of a novel variant of isoform 6. Biochemistry, 44: 1635–1642.]Search in Google Scholar
[Vasiliou V., Nebert D.W. (2005). Analysis and update of the human aldehyde dehydrogenase (ALDH) gene family. Hum. Genom., 2: 138–143.]Search in Google Scholar
[Vasiliou V., Pappa A., Petersen D.R. (2000). Role of aldehyde dehydrogenases in endogenous and xenobiotic metabolism. Chem. Biol. Interact., 129: 1–19.]Search in Google Scholar
[Veldhoven P.P.V. (2010). Biochemistry and genetics of inherited disorders of peroxisomal fatty acid metabolism. J. Lipid Res., 51: 2863–2895.]Search in Google Scholar
[Wang Y., Saelao P., Chanthavixay K., Gallardo R., Bunn D., Lamont S.J., Dekkers J.M., Kelly T., Zhou H. (2018). Physiological responses to heat stress in two genetically distinct chicken inbred lines. Poultry Sci., 97: 770–780.]Search in Google Scholar
[Windhorst H.W. (2007). Changes in poultry production and trade worldwide. World’s Poultry Sci. J., 62: 585–602.]Search in Google Scholar
[Xie J., Li T., Lin L., Zhang L., Lin X., Liu H.C., Odle J., Luo X. (2013). Differential expression of heat shock transcription factors and heat shock proteins after acute and chronic heat stress in laying chickens (Gallus gallus). PloS One, 9: e102204.]Search in Google Scholar
[Xu H., Luo J., Ma G., Zhang X., Yao D., Li M., Loor J.J. (2018). Acyl-CoA synthetase short-chain family member 2 (ACSS2) is regulated by SREBP-1 and plays a role in fatty acid synthesis in caprine mammary epithelial cells. J. Cell. Physiol., 233: 1005–1016.]Search in Google Scholar
[Yoshimura Y., Araki A., Maruta H., Takahashi Y., Yamashita H. (2017). Molecular cloning of rat acss3 and characterization of mammalian propionyl-CoA synthetase in the liver mitochondrial matrix. J. Biochem., 161: 279–289.]Search in Google Scholar
[Young M.D., Wakefield M.J., Smyth G.K., Oshlack A. (2010). Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol., 11: 1–12.]Search in Google Scholar
[Zhang Q., Zhang B., Luo Y. (2019). Cardiac transcriptome study of the effect of heat stress in yellow-feather broilers. Ital J. Anim. Sci., 18: 971–975.]Search in Google Scholar
[Zhang T., Zhao Q., Ye F., Huang C.Y., Chen W.M., Huang W.Q. (2018 a). Alda-1, an ALDH2 activator, protects against hepatic ischemia/reperfusion injury in rats via inhibition of oxidative stress. Free Radic. Res., 52: 629–638.10.1080/10715762.2018.145904229589772]Search in Google Scholar
[Zhang Y., Liu Z., Liu R., Wang J., Zheng M., Li Q., Cui H., Zhao G., Wen J. (2018 b). Alteration of hepatic gene expression along with the inherited phenotype of acquired fatty liver in chicken. Genes, 9: 199.10.3390/genes9040199592454129642504]Search in Google Scholar
[Zhou S.L., Li M.Z., Li Q.H., Guan J.Q., Li X.W. (2012). Differential expression analysis of porcine MDH1, MDH2 and ME1 genes in adipose tissues. Genet. Mol. Res., 11: 1254–1259.]Search in Google Scholar