Cite

Badrul H.Y., McLachlan G., Vrettou C., Collie D. (2011). Optimising the quality and integrity of RNA samples from bronchial air way tissues. Asia Pac. J. Mol. Biol. Biotechnol., 19: 19–27.Search in Google Scholar

Bagnicka E., Winnicka A., Jóźwik A., Rzewuska M., Strzałkowska N., Kościuczuk E., Prusak B., Kaba J., Horbańczuk J.O., Krzyżewski J. (2011). Relationship between somatic cell count and bacterial pathogens in goat milk. Small Rumin. Res., 100: 72–77.10.1016/j.smallrumres.2011.04.014Search in Google Scholar

Ben Chedly H., Boutinaud M., Bernier-Dodier P., Marnet P.G., Lacasse P. (2010). Disruption of cell junctions induces apoptosis and reduces synthetic activity in lactating goat mammary gland. J. Dairy Sci., 93: 2938–2951.10.3168/jds.2009-2678Search in Google Scholar

Ben Chedly H., Lacasse P., Marnet P., Komara M., Marion S., Boutinaud M. (2011). Use of milk epithelial cells to study regulation of cell activity and apoptosis during once-daily milking in goats. Animal, 5: 572–579.10.1017/S1751731110002284Search in Google Scholar

Boutinaud M., Jammes H. (2002). Potential uses of milk epithelial cells: a review. Reprod. Nutr. Dev., 42: 133–147.10.1051/rnd:2002013Search in Google Scholar

Boutinaud M., Rulquin H., Keisler D.H., Djiane J., Jammes H. (2002). Use of somatic cells from goat milk for dynamic studies of gene expression in the mammary gland. J. Anim. Sci., 80: 1258–1269.10.2527/2002.8051258xSearch in Google Scholar

Boutinaud M., Galio L., Lollivier V., Finot L., Wiart S., Esquerré D., Devinoy E. (2013). Unilateral once daily milking locally induces differential gene expression in both mammary tissue and milk epithelial cells revealing mammary remodeling. Physiol. Genomics, 45: 973–985.10.1152/physiolgenomics.00059.2013Search in Google Scholar

Brenaut P., Lefèvre L., Rau A., Laloë D., Pisoni G., Moroni P., Bevilacqua C., Martin P. (2014). Contribution of mammary epithelial cells to the immune response during early stages of a bacterial infection to Staphylococcus aureus. Vet. Res., 45: 16.10.1186/1297-9716-45-16Search in Google Scholar

Brown R., Epis M.R., Horsham J.L., Kabir T.D., Richardson K.L., Leedman P.J. (2018). Total RNA extraction from tissues for microRNA and target gene expression analysis: not all kits are created equal. BMC Biotechnol., 18: 16.10.1186/s12896-018-0421-6Search in Google Scholar

Capuco A.V., Wood D.L., Baldwin R., McLeod K., Paape M.J. (2001). Mammary cell number, proliferation, and apoptosis during a bovine lactation: relation to milk production and effect of bST. J. Dairy Sci., 84: 2177–2187.10.3168/jds.S0022-0302(01)74664-4Search in Google Scholar

Cicinnati V.R., Shen Q., Sotiropoulos G.C., Radtke A., Gerken G., Beckebaum S. (2008). Validation of putative reference genes for gene expression studies in human hepatocellular carcinoma using real-time quantitative RT-PCR. BMC Cancer, 8: 350.10.1186/1471-2407-8-350Search in Google Scholar

Cieslak J., Mackowski M., Czyzak-Runowska G., Wojtowski J., Puppel K., Kuczynska B., Pawlak P. (2015). Screening for the most suitable reference genes for gene expression studies in equine milk somatic cells. PLoS ONE, 10(10): e0139688.10.1371/journal.pone.0139688Search in Google Scholar

Coombes B.K., Hardwidge P.R., Finlay B.B. (2004). Interpreting the host-pathogen dialogue through microarrays. Adv. Appl. Microbiol., 54: 291–331.10.1016/S0065-2164(04)54011-XSearch in Google Scholar

Dalaly B.K., Eitenmiller R.R., Friend B.A., Shahani K.M. (1980). Human milk ribonuclease. Biochim. Biophys. Acta, 65: 381–391.10.1016/0005-2744(80)90505-7Search in Google Scholar

Dastgheib S., Irajie C., Assaei R., Koohpeima F., Mokarram P. (2014). Optimization of RNA extraction from rat pancreatic tissue. Iran. J. Med. Sci., 39: 282–288.Search in Google Scholar

Dudemaine P.L., Fomenky B., Dutoit A., Béjanin L., Ibeagha-Awemu E.M. (2017). 341 Comparison of five commercial kits for total RNA isolation including microRNA from three bovine milk fractions. J. Anim. Sci., 95: 168–169.10.2527/asasann.2017.341Search in Google Scholar

Finot L., Marnet P.G., Dessauge F. (2011). Reference gene selection for quantitative real-time PCR normalization: application in the caprine mammary gland. Small Rumin. Res., 95: 20–26.10.1016/j.smallrumres.2010.08.008Search in Google Scholar

Fleige S., Pfafl M.W. (2006). RNA integrity and the effect on the real-time qRT-PCR performance. Mol. Aspects Med., 27: 126–139.10.1016/j.mam.2005.12.003Search in Google Scholar

Fordyce S.L., Kampmann M.-L., van Doorn N.L., Gilbert M.T.P. (2013). Long-term RNA persistence in postmortem contexts. Investig. Genet., 4: 7.10.1186/2041-2223-4-7Search in Google Scholar

Gallego Romero I., Pai A.A., Tung J., Gilad Y. (2014). RNA-seq: impact of RNA degradation on transcript quantification. BMC Biol., 12: 42.10.1186/1741-7007-12-42Search in Google Scholar

Gupta N., Mathur M.P. (1989). Level and distribution of ribonuclease in milk from different species. Indian J. Dairy Sci., 42: 547–549.Search in Google Scholar

Kolijn K., Geert J.L., van Leenders H. (2016). Comparison of RNA extraction kits and histological stains for laser capture microdissected prostate tissue. BMC Res. Not., 9: 7.10.1186/s13104-015-1813-5Search in Google Scholar

Kowalski M. (2009). Standard of dairy goats’ feeding. In: NRIAP-INRA, Standard of ruminants’ feeding: nutrient value of French and domestic fodders for ruminants, Strzelecki (ed.) (in Polish). National Research Institute of Animal Production, Kraków, Poland, pp. 109–119.Search in Google Scholar

Kuang J., Yan X., Genders A.J., Granata C., Bishop D.J. (2018). An overview of technical considerations when using quantitative real-time PCR analysis of gene expression in human exercise research. PLoS ONE, 13(5): e0196438.10.1371/journal.pone.0196438Search in Google Scholar

Li R., Richoux N., Boutinaud M., Martin P., Gagnaire V. (2014). Role of somatic cells on dairy processes and products: a review. Dairy Sci. Technol., 94: 517–538.10.1007/s13594-014-0176-3Search in Google Scholar

Li R., Dudemaine P.L., Zhao X., Lei C., Ibeagha-Awemu E.M. (2016). Comparative analysis of the miRNome of bovine milk fat, whey and cells. PloS One, 11(4): e0154129.10.1371/journal.pone.0154129Search in Google Scholar

Livak K.J, Schmittgen T.D. (2001). Analysis of relative gene expression data using real time quantitative PCR and the 2∆∆C(T) method. Methods, 25: 402–408.10.1006/meth.2001.1262Search in Google Scholar

Majewska A., Domoradzki T., Grzelkowska-Kowalczyk K. (2019). Transcriptomic profiling during myogenesis. Methods Mol. Biol., 1889: 127–168.10.1007/978-1-4939-8897-6_9Search in Google Scholar

Narrandes S., Xu W. (2018). Gene expression detection assay for cancer clinical use. J. Cancer, 9: 2249–2265.10.7150/jca.24744Search in Google Scholar

Norollahi S.A., Kokhaee P., Rashidy-Pour A., Hojati V., Norollahi S.E., Larijani L.V., Samadan A.A. (2018). Comparison of methods of RNA extraction from breast and gastric cancer tissues. Crescent J. Med. Biol. Sci., 5: 25–28.Search in Google Scholar

Peirson S.N, Butler J.N. (2007). RNA extraction from mammalian tissues. Methods Mol. Biol., 362: 315–327.10.1007/978-1-59745-257-1_22Search in Google Scholar

Pławińska-Czarnak J., Bagnicka E., Kaba J., Bogdan J., Zarzyńska J. (2014). Analysis of the CAEV infection impact on the milk yield and milk SCC of Polish dairy goats. J. Microbiol. Biotech. Food Sci., 3: 39–42.Search in Google Scholar

Pławińska-Czarnak J., Zarzyńska J., Majewska A., Jank M., Kaba J., Bogdan J., Anusz K., Bagnicka E. (2019). Selected tissues of two Polish goat breeds do not differ on genomic level. Anim. Sci. Pap. Rep., 37: 53–64.Search in Google Scholar

Reiman M., Laan M., Rull K., Sõber S. (2017). Effects of RNA integrity on transcript quantification by total RNA sequencing of clinically collected human placental samples. FASEB J., 31: 3298–3308.10.1096/fj.201601031RRSearch in Google Scholar

Reisberg S., Krebs K., Lepamets M., Kals M., Mägi R., Metsalu K., Lauschke V.M., Vilo J., Milani L. (2018). Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions. Genet. Med., 21: 1345–1354.10.1038/s41436-018-0337-5Search in Google Scholar

Samadani A.A., Nikbakhsh N., Fattahi S., Pourbagher R., Aghajanpour Mir S.M., Mousavi Kani N., Abedian Z., Akhavan-Niaki H. (2015). RNA extraction from animal and human's cancerous tissues: does tissue matter? Int. J. Mol. Cel. Med., 4: 54–59.Search in Google Scholar

Sanchez-Macias D., Castro N., Moreno-Indias I., Morales-dela Nuez A., Briggs H., Capote J., Argüello A. (2010). The effects of storage temperature on goat milk somatic cell count using the DeLaval counter. Trop. Anim. Health Prod., 42: 1317–1320.10.1007/s11250-010-9586-2Search in Google Scholar

Schroeder A., Mueller O., Stocker S., Salowsky R., Leiber M., Gassmann M., Lightfoot S., Menzel W., Granzow M., Ragg T. (2006). The RIN: an RNA integrity number for assigning integrity values to RNA measurements. BMC Mol. Biol., 7: 3.10.1186/1471-2199-7-3Search in Google Scholar

Sellin Jeffries M.K., Kiss A.J., Smith A.W., Oris J.T. (2014). A comparison of commercially-available automated and manual extraction kits for the isolation of total RNA from small tissue samples. BMC Biotechnol., 14: 94.10.1186/s12896-014-0094-8Search in Google Scholar

Suárez-Vega A., Gutiérrez-Gil B., Klopp C., Robert-Granie C., Tosser-Klopp G., Arranz J.J. (2015). Characterization and comparative analysis of the milk transcriptome in two dairy sheep breeds using RNA sequencing. Sci. Rep., 5: 18399.10.1038/srep18399Search in Google Scholar

Thompson K.L., Pine P.S., Rosenzweig B.A., Turpaz Y., Retief J. (2007). Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA. BMC Biotechnol., 7: 57.10.1186/1472-6750-7-57Search in Google Scholar

Toral P.G., Hervás G., Suárez-Vega A., Arranz J.J., Frutos P. (2016). Isolation of RNA from milk somatic cells as an alternative to biopsies of mammary tissue for nutrigenomic studies in dairy ewes. J. Dairy Sci., 99: 8461–8471.10.3168/jds.2016-11184Search in Google Scholar

Wickramasinghe S., Rincon G., Islas-Trejo A., Medrano J.F. (2012). Transcriptional profiling of bovine milk using RNA sequencing. BMC Genomics, 13: 45.10.1186/1471-2164-13-45Search in Google Scholar

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