Analysis of Virome by High-Throughput Sequencing Revealed Multiple Infection and Intra-Virus Diversity in a Single Grapevine Plant

ALMEIDA, R.P. – DAANE, K.M. – BELL, V.A. – BLAISDELL, G.K. – COOPER, M.L. – HERRBACH, E. – PIETERSEN, G. 2013. Ecology and management of grapevine leafroll disease. In Frontiers in Microbiology, vol. 4, 2013, pp. 94, doi:10.3389/fmicb.2013.00094.10.3389/fmicb.2013.00094363393423630520Search in Google Scholar

BASSO, M.S. – FAJARDO, T.V.M., – SALDARELLI, P. 2017. Grapevine virus diseases: economic impact and current advances in viral prospection and management. In Revista Brasileira de Fruticultura, vol. 39, 2017, e-411, doi: 10.1590/0100-2945201741110.1590/0100-29452017411Search in Google Scholar

BRISTER, J.R. – AKO-ADJEI, D. – BAO, Y. – BLINKOVA, O. 2015. NCBI Viral Genomes Resource. In Nucleic Acids Research, vol. 43, 2015, pp. 571–577. doi: 10.1093/nar/gku120710.1093/nar/gku1207438398625428358Search in Google Scholar

GLASA, M. – PREDAJŇA, L. 2012. Partial sequence analysis of a grapevine leafroll-associated virus 3 isolate from Slovakia. In Journal of Plant Pathology, vol. 94, 2012, pp. 675–679.Search in Google Scholar

GLASA, M. – PREDAJŇA, L. – KOMÍNEK, P. – NAGYOVÁ, A. – CANDRESSE, T. – OLMOS, A. 2014. Molecular characterization of divergent grapevine Pinot gris virus isolates and their detection in Slovak and Czech grapevines. In Archives of Virology, vol. 159, 2014, pp. 2103–2107.Search in Google Scholar

GLASA, M. – PREDAJŇA, L. – KOMÍNEK, P. 2011. Grapevine fleck virus isolates split into two distinct molecular groups. In Journal of Phytopathology, vol. 159, 2011, pp. 805–807.Search in Google Scholar

GLASA, M. – PREDAJŇA, L. – SIHELSKÁ, N. – ŠOLTYS, K. – RUIZGARCÍA, A.B. – OLMOS, A. – WETZEL, T. – SABANADZOVIC, S. 2018. Grapevine virus T is relatively widespread in Slovakia and Czech Republic and genetically diverse. In Virus Genes, vol. 54, 2018, pp. 737–741.Search in Google Scholar

GLASA, M. – PREDAJŇA, L. – ŠOLTYS, K. – SABANADZOVIC, S. – OLMOS, A. 2015. Detection and molecular characterisation of Grapevine Syrah virus-1 isolates from Central Europe. In Virus Genes, vol. 51, 2015, pp. 112–121.Search in Google Scholar

GLASA, M. – PREDAJŇA, L. – ŠOLTYS, K. – SIHELSKÁ, N. – NAGYOVÁ, A. – WETZEL, T. – SABANADZOVIC, S. 2017. Analysis of Grapevine rupestris stem pitting-associated virus in Slovakia reveals differences in intra-host population diversity and naturally occurring recombination events. In The Plant Pathology Journal, vol. 33, 2017, pp. 34–42.Search in Google Scholar

GLASA, M. – PREDAJŇA, L. – WETZEL, T. – ŠOLTYS, K. – SABANADZOVIC, S. 2019. First report of Grapevine rupestris vein feathering virus in grapevine in Slovakia. In Plant Disease, vol. 103, 2019, pp. 170.Search in Google Scholar

KOMÍNEK, P. – GLASA, M. – KOMÍNKOVÁ, M. 2009. Analysis of multiple virus-infected grapevine plant reveals persistence but uneven virus distribution. In Acta Virologica, vol. 53, 2009, pp. 281–285.Search in Google Scholar

KUMAR, S. – STECHER, G. – TAMURA, K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. In Molecular Biology and Evolution, vol. 33, 2016, pp. 1870–1874.Search in Google Scholar

MALIOGKA, V.I. – MARTELLI, G.P. – FUCHS, M. – KATIS, N.I. 2015. Control of viruses infecting grapevine. In Advances in Virus Research, vol. 91, 2015, pp. 175–227.Search in Google Scholar

MALIOGKA, V.I. – MINAFRA, A. – SALDARELLI, P. – RUIZ-GARCÍA, A.B. – GLASA, M. – KATIS, N. – OLMOS, A. 2018. Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies. In Viruses, vol. 10, pii: E436, doi: 10.3390/v1008043610.3390/v10080436611622430126105Search in Google Scholar

MARTELLI, G.P. 2017. An overview on grapevine viruses, viroids, and the diseases they cause. In Grapevine Viruses: Molecular Biology, Diagnostics and Management (Meng, B. – Martelli, G.P. – Golino, D.A. – Fuchs, M. eds.)- Springer International Publishing, 2017, pp. 31–46. doi: 10.1007/978-3-319-57706-7_210.1007/978-3-319-57706-7_2Search in Google Scholar

PREDAJŇA, L. – GAŽIOVÁ, A. – HOLOVIČOVÁ, E. – GLASA, M. 2013. Analysis of a short genomic region of Grapevine leafroll-associated virus 1 (GLRaV-1) reveals the presence of two different molecular groups of isolates in Slovakia. In Acta Virologica, vol. 57, 2013, pp. 353–356.Search in Google Scholar

PREDAJŇA, L. – GLASA, M. 2016. Partial sequence analysis of geographically close Grapevine virus A isolates reveals their high regional variability and an intra-isolate heterogeneity. In Journal of Phytopathology, vol. 164, 2016, pp. 427–431.Search in Google Scholar

ROZAS, J. – FERRER-MATA, A. – SÁNCHEZ-DELBARRIO, J.C. – GUIRAO-RICO, S. – LIBRADO, P. – RAMOS-ONSINS, S.E. – SÁNCHEZGRACIA, A. 2017. DnaSP 6: DNA Sequence Polymorphism Analysis of large data sets. In Molecular Biology and Evolution, vol. 34, 2017, pp. 3299–3302.Search in Google Scholar

SALDARELLI, P. – GIAMPETRUZZI, A – MAREE, H – AL RWAHNIH, M. 2017. High-Throughput Sequencing: Advantages beyond virus identification. In Grapevine Viruses: Molecular Biology, Diagnostics and Management (Meng, B. – Martelli, G.P. – Golino, D.A. – Fuchs, M. eds.), Springer International Publishing, 2017, pp. 625–642, doi: 10.1007/978-3-319-57706-7_3010.1007/978-3-319-57706-7_30Search in Google Scholar

VELASCO, R. – ZHARKIKH, A. – TROGGIO, M. – CARTWRIGHT, D.A. – CESTARO, A. et al. 2007. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. In PLoS One, vol. 2, 2007, E1326. doi: 10.1371/journal.pone.000132610.1371/journal.pone.0001326214707718094749Search in Google Scholar

ZHERDEV, A.V. – VINOGRADOVA, S.V. – BYZOVA, N.A. – POROTIKOVA, E.V. – KAMIONSKAYA, A.M. – DZANTIEV, B.B. 2018. Methods for the diagnosis of grapevine viral infections: A review. In Agriculture, vol. 8, 2018, pp. 195; doi: 10.3390/agriculture8120195.10.3390/agriculture8120195Search in Google Scholar