Association mapping for identification of ISSR and AFLP markers linked with resin yield in Himalayan Chir Pine (Pinus roxburghii Sarg

ABDURAKHMONOV, I. Y. and A. ABDUKARIMONOV (2008): Application of association mapping to understanding the genetic diversity of plant germplasm resources. International Journal of Plant Genomics, 574927.10.1155/2008/574927Search in Google Scholar

ACHLEITNER, A., N. A. TINKER, E. ZECHNER and H. BUERSTMAYR (2008): Genetic diversity among oat varieties of worldwide origin and associations of AFLP markers with quantitative traits. Theoretical and Applied Genetics 117: 1041-1053.10.1007/s00122-008-0843-ySearch in Google Scholar

AGUNDEZ, D., B. DEGEN, G. VON, WUEHLISCH and R. ALIA (1997): Genetic variation of Aleppo pine (Pinus halepensis MILL.) in Spain. Forest Genetics 4(4): 201-209.Search in Google Scholar

BUCKLER, E. S. and J. M. THORNSBERRY (2002): Plant molecular diversity and applications to genomics. Current Opinion in Plant Biotechnology 5: 107-111.10.1016/S1369-5266(02)00238-8Search in Google Scholar

CHATTERJEE, S. N. and T. P. MOHANDAS (2003): Identification of ISSR markers associated with productivity traits in silkworm, Bombyx mori L. Genome 46: 438-447.10.1139/g03-02412834060Search in Google Scholar

CHATTERJEE, S. N. and A. R. PRADEEP (2003): Molecular markers (RAPD) associated with growth, yield and origin of the silkworm, Bombyx mori L. in India. Russian Journal of Genetics 39: 1365-1377.10.1023/B:RUGE.0000009149.92889.85Search in Google Scholar

CHO, G. T., J. LEE, J. K. MOON, M. S. YOON, H. J. BAEK, J. H. KANG, T. S. KIM and N. C. PAEK (2008): Genetic diversity and population structure of Korean soybean landrace [Glycine max (L.) Merr.]. Journal of Crop Science and Biotechnology 11(2): 83-90.Search in Google Scholar

COPPEN, J. J. W. and G. A. HONE (1995): Gum naval stores: turpentine and rosin from pine resin. FAO, Non-wood Forest Products 2: 62 p.Search in Google Scholar

DARVASI, A., A. WEINTREB, V. MINKE, S. WELLER and M. SOLLER (1993): Detecting marker QTL linkage and estimating QTL gene effect and map location using a saturated genetic map. Genetics 134: 943-951.10.1093/genetics/134.3.94312055288349116Search in Google Scholar

DAVIES, J., W. A. BERZONSKY and G. D. LEACH (2006): A comparison of marker-assisted and phenotypic selection for high grain protein content in spring wheat. Euphytica 152: 117-134.10.1007/s10681-006-9185-5Search in Google Scholar

ENDER, M., K. TERPSTRA and J. D. KELLY (2008): Marker-assisted selection for white mold resistance in common bean. Molecular Breeding 21: 149-157.10.1007/s11032-007-9115-9Search in Google Scholar

EVANNO, G., S. REGNAUT and J. GOUDET (2005): Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14: 2611-2620.10.1111/j.1365-294X.2005.02553.x15969739Search in Google Scholar

EXCOFFIER, L., G. LAVAL and S. SCHNEIDER (2005): Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics online 1: 47-50.Search in Google Scholar

EXCOFFIER, L., P. E. SMOUSE and J. M. QUATTRO (1992): Analysis of molecular variance inferred from metric distances among DNA haplotypes; Application to human mitochondrial DNA restriction data. Genetics 131: 479-491.10.1093/genetics/131.2.47912050201644282Search in Google Scholar

FALUSH, D., M. STEPHENS and J. K. PRITCHARD (2003): Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.10.1093/genetics/164.4.1567146264812930761Search in Google Scholar

FELSENSTEIN, J. (1985): Confidence limits in phylogenies: an approach using bootstrap. Evolution 39: 783-791. FORESTRY STATISTICS INDIA (2011): Published by Division of Statistics, ICFRE, Dehradun. Pages: 113Pp10.1111/j.1558-5646.1985.tb00420.x28561359Search in Google Scholar

GEBHARDT, C., A. BALLVORA, B. WALKEMEIER, P. OBERHAGEMANN and K. SCHULER (2004): Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type. Molecular Breeding 13: 93-102.10.1023/B:MOLB.0000012878.89855.dfSearch in Google Scholar

GHILDIYAL, S. K., C. M. SHARMA and S. GAIROLA (2009): Environmental variation in seed and seedling characteristics of Pinus roxburghii Sarg. from Uttarakhand, India. Applied Ecology and Environmental research 7(2): 121-129.10.15666/aeer/0702_121129Search in Google Scholar

HAMRICK, J. L., M. J. W. GODT and S. L. SHERMANBROYLES (1992): Factors influencing levels of genetic diversity in woody plant species. New Forest 6: 95-124.10.1007/BF00120641Search in Google Scholar

HANSEN, M., T. KRAFT, S. GANESTAM, T. SALL and N. O. NILSSON (2001): Linkage disequilibrium mapping of the bolting gene in sea beet using AFLP markers, Genetic Research 77(1): 61-66.10.1017/S001667230000485711279831Search in Google Scholar

HARTL, D. L. and A. G. CLARK (1997): Principles of population genetics. SinauerAssoc, Sunderland, MA, USA. HIEBERT, R. D. and J. L. HAMRICK (1983): Patterns and levels of genetic variation in Great Basin bristlecone pine, Pinus longaevea. Evolution 37(2): 302-310.Search in Google Scholar

HOLSINGER, K. E., P. O. LEWIS and D. K. DEY (2002): A Bayesian approach to inferring population structure from dominant markers. Mol. Ecol. 11: 1157-1164Search in Google Scholar

HONG, Y. P., H. Y. KWON and I. S. KIM (2007): I-SSR markers revealed inconsistent phylogeographic patterns among populations of Japanese Red Pines in Korea. Silvae Genetica 56(1): 22-26.10.1515/sg-2007-0003Search in Google Scholar

KAR, P. K., P. P. SRIVASTAVA, A. K. AWASTHI and S. R. URS (2008): Genetic variability and association of ISSR markers with some biochemical traits in mulberry (Morus spp.) genetic resources available in India. Tree Genetics and Genomes 4: 75-83.10.1007/s11295-007-0089-xSearch in Google Scholar

KENNEDY, B. W., M. QUINTON and J. A. M. VANARENDONK (1992): Estimation of effects of single genes on quantitative traits. J. Anim. Sci. 70: 2000-2012.Search in Google Scholar

KIM, Z. S., S. W. LEE, J. H. LIM, J. W. HWANG and K. W. KWON (1994): Genetic diversity and structure of natural populations of Pinus koraiensis (Sieb. et Zucc.) in Korea. Forest genetics 1: 41-49.Search in Google Scholar

KNOLL, J. and G. EJETA (2008): Marker-assisted selection for early-season cold tolerance in sorghum: QTL validation across populations and environments. Theoretical and Applied Genetics 116: 541-553.10.1007/s00122-007-0689-818092147Search in Google Scholar

KRAAKMAN, A. T. W., F. MARTINEZ, B. MUSSIRALIEV, F. A. VAN EEUWIJK and R. E. NIKS (2006): Linkage disequilibrium mapping of morphological, resistance, and other agronomically relevant traits in modern spring barley cultivars. Molecular Breeding 17: 41-58.10.1007/s11032-005-1119-8Search in Google Scholar

KRAAKMAN, A. T. W., R. E. NIKS, P. M. M. M. VAN DEN BERG, P. STAM and F. A. VAN EEUWIJK (2004): Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics, 168: 435-446.10.1534/genetics.104.026831144812515454555Search in Google Scholar

KREMER, A., H. S. CARON, N. CAVERS, G. COLPAERT and GHEYSEN (2005): Monitoring genetic diversity in tropical trees with multilocus dominant markers. Heredity 95: 274-280.10.1038/sj.hdy.680073816106259Search in Google Scholar

KUANG, H., T. E. RICHARDSON, S. D. CARSON and B. C. BONGARTEN (1998): An allele responsible for seedling death in Pinus radiata D. Don. Theor. Appl. Genet. 96: 640-644.Search in Google Scholar

LEDIG, F. T. (1986): Heterozygosity, heterosis, and fitness in outcrossing plants. In: M. E. SOULE (Eds.), Conservation biology: the science of scarcity and diversity, Sinauer, Sunderland, Massachusetts, USA. pp. 77-104.Search in Google Scholar

LOVELESS, M. D. and J. L. HAMRICK (1984): Ecological determinants of genetic structure in plant populations. Annual review of Ecology and Systematics 15: 65-95.10.1146/annurev.es.15.110184.000433Search in Google Scholar

MAUREIRA-BUTLER, I. J., J. A. UDALL and T. C. OSBORN (2007): Analyses of a multi-parent population derived from two diverse alfalfa germplasm: testcross evaluations and phenotype-DNA associations. Theoretical and Applied Genetics 115: 859-867.10.1007/s00122-007-0614-117676305Search in Google Scholar

MILLER, A. J. and B. A. SCHAAL (2006): Domestication and the distribution of genetic variation in wild and cultivated populations of the Mesoamerican fruit tree Spondias purpurea L. (Anacardiaceae). Mol. Ecol. 15: 1467-148010.1111/j.1365-294X.2006.02834.x16629804Search in Google Scholar

MISHRA, R. K. and S. SEN-MANDI (2004): Molecular profiling and development of DNA marker associated with drought tolerance in tea clones growing in Darjeeling. Current Science 87: 60-66.Search in Google Scholar

MUELLER-STARCK, G. (1995): Genetic variation in high elevation populations of Norway spruce (Picea abies [L.] Karst.) in Switzerland. Silvae Genetica 44: 356-362.Search in Google Scholar

NEALE, D. B. and O. SAVOLAINEN (2004): Association genetics of complex traits in conifers. Trends Plant Science 9: 325-330.10.1016/j.tplants.2004.05.00615231277Search in Google Scholar

NYBOM, H. and I. V. BARTISH (2000): Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspectives in Plant Ecology, Evolution and Systematics 3: 93-114.10.1078/1433-8319-00006Search in Google Scholar

OBERT, D. E., D. Z. SKINNER and D. L. STUTEVILLE (2000): Association of AFLP markers with downy mildew resistance in autotetraploid alfalfa. Molecular Breeding 6: 287-294.10.1023/A:1009672008702Search in Google Scholar

PERRIER, X. and J. P. JACQUEMOUD-COLLET (2006): DARwin software. Genetic improvement of vegetatively propagated crops. http://darwin.cirad.fr/Home.phpSearch in Google Scholar

PRADEEP, A. R., A. H. JINGADE and R. S. URS (2007): Molecular markers for biomass traits: association, interaction and genetic divergence in silkworm Bombyx mori. Biomarker Insights 2: 197-217.10.1177/117727190700200032Search in Google Scholar

PRITCHARD, J. K., M. STEPHENS and P. DONNELLY (2000a): Inference of population structure using multilocus genotype data. Genetics 155: 945-959.10.1093/genetics/155.2.945146109610835412Search in Google Scholar

PRITCHARD, J. K., M. STEPHENS, N. A. ROSENBERG and P. DONNELLY (2000b): Association mapping in structured population. American Journal of Human Genetics 67: 170-181.10.1086/302959Search in Google Scholar

PRITCHARD, J. K., M., STEPHENS, N. A. ROSENBERG and P. DONNELLY (2000): Association Mapping in Structured Populations. American Journal of Human Genetics 67: 170-181.10.1086/302959Search in Google Scholar

RAWAT, A., S. BARTHWAL and H. S. GINWAL (2014a): Comparative assessment of SSR, ISSR and AFLP markers for characterization of selected genotypes of Himalayan Chir pine (Pinus roxburghii Sarg.) based on resin yield. Silvae Genetica 63 (3): 94-109.10.1515/sg-2014-0013Search in Google Scholar

RAWAT, A., S. BARTHWAL and H. S. GINWAL (2014b): Association mapping for resin yield in Pinus roxburghii Sarg. Using microsatellite markers. Silvae Genetica 63 (6): 253-266.10.1515/sg-2014-0033Search in Google Scholar

RIBAUT, J. M. and D. A. HOISINGTON (1998): Marker assisted selection: new tools and strategies. Trends in Plant Science 3: 236-239.10.1016/S1360-1385(98)01240-0Search in Google Scholar

ROY, J. K., R. BANDHOPADYAY, S. RUSTGI, H. S. BALYAN and P. K. GUPTA (2006): Association analysis of agronomically important traits using SSR, SAMPL and AFLP markers in bread wheat. Current Science 90(5): 683-689.Search in Google Scholar

RUAN, C. J., H. LI and S. MOPPER (2009): Characterization and identification of ISSR markers associated with resistance to dried-shrink disease in sea uckthorn. Molecular Breeding 24: 255-268.10.1007/s11032-009-9288-5Search in Google Scholar

SELDIN, M. F., R. SHIGETA, P. VILLOSLADA, C. SELMI, J. TUOMILEHTO, G. SILVA, J. W. BELMONT, L. KLARESKOG and P. K. GREGERSEN (2006): European Population Substructure: Clustering of Northern and Southern Populations. PLoS Genetics 2(9): 1339-1351.10.1371/journal.pgen.0020143156442317044734Search in Google Scholar

SHALINI, K. V., S. MANJUNATHA, P. LEBRUN, A. BERGER, L. BAUDOUIN, N. PIRANY, R. M. RANGANATH and D. T. PRASAD (2007): Identification of molecular markers associated with mite resistance in coconut (Cocos nucifera L.). Genome 50: 35-42.10.1139/g06-13617546069Search in Google Scholar

SILBIGER, R. N., S. A. CHRIST, A. C. LEONARD, M. GARG and D. L. LATTIER (1998): Preliminary studies on the population genetics of the centralSearch in Google Scholar

stoneroller (Campostoma anomalum) from the Great Miami River Basin, Ohio. Environ. Monit. Assess. 51: 481-495.Search in Google Scholar

SKOT, L., M. O. HUMPHREYS, I. ARMSTEAD, S. HEYWOOD, K. P. SKOT, R. SANDERSON, I. D. THOMAS, K. H. CHORLTON and N. R. S. HAMILTON (2005): An association mapping approach to identify flowering time genes in natural populations of Lolium perenne (L.). Molecular Breeding 15: 233-245.10.1007/s11032-004-4824-9Search in Google Scholar

SRIVASTAVA, P. P., P. K. KAR, A. K. AWASTHI and S. R. URS (2007): Identification and association of ISSR markers for thermal stress in polyvoltine silkworm Bombyx mori. Russian Journal of Genetics 43: 858-864.10.1134/S1022795407080042Search in Google Scholar

VIJAYAN, K., P. P. SRIVATSAVA, C. V. NAIR, A. K. AWASTHI, A. TIKADER, B. SREENIVASA and S. R. URS (2006): Molecular characterization and identification of markers associated with yield traits in mulberry using ISSR markers. Plant Breeding 125: 298-301.10.1111/j.1439-0523.2006.01212.xSearch in Google Scholar

VIRK, P. S., B. V. FORD-LLOYD, M. T. JACKSON, H. S. POONI, T. P. CLEMENO and H. J. NEWBURY (1996): Predicting quantitative variation within rice germplasm using molecular markers. Heredity 76: 296-304.10.1038/hdy.1996.43Search in Google Scholar

VOS, P., R. HOGERS, M. BLEEKER, M. REIJANS, T. VAN DE LEE et al. (1995): AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.10.1093/nar/23.21.44073073977501463Search in Google Scholar

WANG, D., Z. G. WEI, C. P. YANG and G. J. LIU (2008): Analysis and identification of SCAR molecular markers associated with birch fiber length trait. Journal of Forest Research 19: 288-292.10.1007/s11676-008-0051-2Search in Google Scholar

WANG, Y. Q. (2007): Study on Betula platyphylla long fiber trait by SSR marker technology. Dissertation for the Degree of Master, Northeast Forestry University.Search in Google Scholar

WHEELER, N. C. and R. P. GURIES (1982): Population structure, genetic diversity and morphological variation in Pinus contorta Dougl. Canadian Journal of Forest Research 12: 595-606.10.1139/x82-091Search in Google Scholar

WILDE, F., V. KORZUN, E. EBMEYER, H. H. GEIGER and T. MIEDANER (2007): Comparison of phenotypic and marker-based selection for Fusarium head blight resistance and DON content in spring wheat. Molecular Breeding 19: 357-370.10.1007/s11032-006-9067-5Search in Google Scholar

WILLIAMS, J. G. K., A. R. KUBELKI, K. J. LIVAK and S. V. TINGEY (1990): DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535.10.1093/nar/18.22.65313326061979162Search in Google Scholar

WRIGHT, A. J. and R. P. MOWERS (1994): Multiple regression for molecular-marker, quantitative trait data from large F2 a populations. Theoretical and Applied Genetics 89: 305-312. WRIGHT, S. (1978): Evolution and the genetics of Populations (3rd edition). University of Chicago Press, Chicago.10.1007/BF0022515924177846Search in Google Scholar

XIA, D. A., Z. G. WEI, C. P. YANG and G. J. LIU (2008): Analysis of ISSR and SCAR Markers associated with birch fiber length trait. Journal of Northeast Forestry University 39: 1-4.Search in Google Scholar

YAN, G., J. ROMERO-SEVERSON, M. WALTON, D. D. CHADEE and D. W. SEVERSON (1999): Population genetics of the yellow fever mosquito in Trinidad: comparisons of amplified fragment length polymorphism (AFLP) and restriction fragment length polymorphism (RFLP) markers. Mol. Ecol. 8: 951-963.10.1046/j.1365-294x.1999.00647.x10434416Search in Google Scholar

YEH, F. C. and Y. A. EL-KASSABY (1980): Enzyme variation in natural populations of Sitka spruce (Picea sitchensis). Genetic variation patterns among trees from 10 provenances. Canadian Journal of Forest Research 10: 415-422.10.1139/x80-067Search in Google Scholar

YONASH, N., E. D. HELLER, J. HILLEL and A. CAHANER (2000): Detection of RFLP markers associated with antibody response in meat-type chickens: haplotype/ genotype, single-band and multiband analyses of RFLP in the major histocom-patibility complex. Journal of Heredity 91: 24-30.10.1093/jhered/91.1.2410739120Search in Google Scholar

ZHAO, Y., H. WANG, W. CHEN and Y. LI (2014): Genetic Structure, Linkage Disequilibrium and Association Mapping of Verticillium Wilt Resistance in Elite Cotton (Gossypium hirsutum L.) Germplasm Population. PLoS ONE 9(1): e86308. doi:10.1371/journal. pone.0086308Search in Google Scholar

ZHIVOTOVSKY, L. A. (1999): Estimating population structure in diploids with multilocus dominant DNA markers. Mol. Ecol. 8: 907-913.Search in Google Scholar