Spatial genetic structure in the very rare and species-rich Picea chihuahuana tree community (Mexico)

ACHERÉ, V., J. M. FAVRE, G. BESNARD and S. JEANDROZ (2005): Genome organization of molecular differentiation in Norway spruce (Picea abies). Mol. Ecol. 14: 3191-3201.Search in Google Scholar

Bonin, A., E. BELLEMAIN, E. P. BRONKEN, F. POMPANON et al. (2004): How to track and assess genotyping errors in population genetics studies. Mol. Ecol. 13: 3261-3273.Search in Google Scholar

CAIN, M. L., B. G. MILLIGAN and A. E. STRAND (2000): Long-distance seed dispersal in plant populations. Am. J. Bot. 87: 1217-1227.10.2307/2656714Search in Google Scholar

CLARK, P. J. and F. C. EVANS (1954): Distance to nearest neighbour as a measure of spatial relationships in populations. Ecology 35: 445-453.10.2307/1931034Search in Google Scholar

CLARK, D. B., M. W. PALMER and D. A. CLARK (1999): Edaphic factors and the landscape-scale distributions of tropical rain forest trees. Ecology 80: 2662-2675.10.1890/0012-9658(1999)080[2662:EFATLS]2.0.CO;2Search in Google Scholar

DE LAFONTAINE, G., A. DUCOUSSO, S. LEFEVRE, E. MAGNANOU and R. J. PETIT (2013): Stronger spatial genetic structure in recolonized areas than in refugia in the European beech. Mol. Ecol. 22: 4397-4412.Search in Google Scholar

DEGEN, B. (2000): SGS: Spatial Genetic Software. Computer program and user’s manual. http://kourou.cirad.fr/genetique/software.html.Search in Google Scholar

DEGEN, B., R. PETIT and A. KREMER (2001): SGS - Spatial Genetic Software: A Computer Program for Analysis of Spatial Genetic and Phenotypic Structures of Individuals and Populations. J. Hered. 92: 447-448.10.1093/jhered/92.5.447Search in Google Scholar

DEICHSEL, G. and H. J. TRAMPISCH (1985): Clusteranalyse und Diskriminanzanalyse. Stuttgart: Gustav Fischer Verlag.Search in Google Scholar

DICK, C.W., F. A. JONES, O. J. HARDY and R. J. PETIT (2008): Spatial scales of seed and pollen-mediated gene flow in tropical forest trees. Trop. Plant Biol. 1: 20-33.Search in Google Scholar

EPPERSON, B. K. (1992): Spatial structure of genetic variation within populations of forest trees. New Forest. 6: 257-278.10.1007/BF00120648Search in Google Scholar

EPPERSON, B. K. (1993): Recent advances in correlation analysis of spatial patterns of genetic variation. Evol. Biol. 27: 95-155.Search in Google Scholar

EPPERSON, B. K. and M. GI CHUNG (2001): Spatial genetic structure of allozyme polymorphisms within populations of Pinus strobus (Pinaceae). Am. J. Bot. 88: 1006-1010.10.2307/2657081Search in Google Scholar

FOLL, M., M. C. FISCHER, G. HECKEL and L. EXCOFFIER (2010): Estimating population structure from AFLP amplification intensity. Mol. Ecol. 19: 4638-4647.Search in Google Scholar

FOLL, M. and O. E. GAGGIOTTI (2008): A genome scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspective. Genetics 180: 977-993.10.1534/genetics.108.092221Search in Google Scholar

FRECKLETON, R. P. and A. R. WATKINSON (2002): Largescale spatial dynamics of plants: metapopulations, regional ensembles and patchy populations. J. Ecol. 90: 419-434.10.1046/j.1365-2745.2002.00692.xSearch in Google Scholar

FRELICH, L. E., J. L. MACHADO and P. B. REICH (2003): Fine-scale environmental variation and structure of understorey plant communities in two old-growth pine forests. J. Ecol. 91: 283-293.10.1046/j.1365-2745.2003.00765.xSearch in Google Scholar

GEHRING, J. L. and L. F. DELPH (1999): Fine-scale genetic structure and clinal variation in Silene acaulis despite high gene flow. Heredity 82: 628-637.10.1046/j.1365-2540.1999.00524.xSearch in Google Scholar

GORDON, A. G. (1968): Ecology of Picea chihuahuana Martínez. Ecology 49: 880-896.10.2307/1936540Search in Google Scholar

HEUERTZ, M., X. VEKEMANS, J. F. HAUSMAN, M. PALADA and O. J. HARDY (2003): Estimating seed vs. pollen dispersal from spatial genetic structure in the common ash. Mol. Ecol. 12: 2483-2495.Search in Google Scholar

HAMPE, A. and R. J. PETIT (2005): Conserving biodiversity under climate change: the rear edge matters. Ecol. Lett. 8: 461-467.Search in Google Scholar

KETTLE, C. J., P. M. HOLLINGSWORTH, D. BURSLEM et al. (2011): Determinants of fine-scale spatial genetic structure in three co-occurring rain forest canopy trees in Borneo. Perspect. Plant Ecol. Evol. Syst. 13: 45-54.Search in Google Scholar

KRAUSS, S. L. (2000): Accurate gene diversity estimates from amplified fragment length polymorphism (AFLP) markers. Mol. Ecol. 9: 1241-1245.Search in Google Scholar

JUMP, A. S. and J. PEÑUELAS (2007): Extensive spatial genetic structure revealed by AFLP but not SSR molecular markers in the wind-pollinated tree, Fagus sylvatica. Mol. Ecol. 16: 925-936.Search in Google Scholar

JARAMILLO-CORREA, J. P., J. BEAULIEU, F. T. LEDIG and J. BOUSQUET (2006): Decoupled mitochondrial and chloroplast DNA population structure reveals holocene collapse and population isolation in a threatened mexican- endemic conifer. Mol. Ecol. 15: 2787-2800.Search in Google Scholar

LEDIG, F. T., V. JACOB-CERVANTES, P. D. HODGSKISS and T. EGUILUZ-PIEDRA (1997): Recent evolution and divergence among populations of a rare Mexican endemic, Chihuahua spruce, following Holocene climatic warming. Evolution 51: 1815-1827.10.1111/j.1558-5646.1997.tb05105.x28565106Search in Google Scholar

LEDIG, F. T., M. MAPULA-L, B. BERMEJO-V, V. REYES-H, C. FLORES-LÓPEZ and M. A. CAPÓ-ARTEAGA (2000): Locations of endangered spruce populations in Mexico and the demography of Picea chihuahuana. Madroño 47: 71-88.Search in Google Scholar

LEDIG, F. T. (2012): Climate change and conservation. Acta Silvatica et Lignaria Hungarica. 8: 57-74.10.2478/v10303-012-0005-4Search in Google Scholar

LEINEMANN, L., W. STEINER, B. HOSIUS, O. KUCHMA, W. ARENHÖVEL, B. FUSSI, B. HAASE, R. KÄTZEL, M. ROGGE and R. Finkeldey (2013): Genetic variation of chloroplast and nuclear markers in natural populations of hazelnut (Corylus avellana L.) in Germany. Plant Syst Evol. 299: 36-378.10.1007/s00606-012-0727-0Search in Google Scholar

LEINEMANN, L., J. KLEINSCHMIT, B. FUSSI, B. HOSIUS, O. KUCHMA, W. ARENHÖVEL, P. LEMMEN, R. KÄTZEL, M. ROGGE and R. FINKELDEY (2014): Genetic composition and differentiation of sloe (Prunus spinosa L.) populations in Germany with respect to the tracing of reproductive plant material. Plant Syst. Evol. Online first, DOI 10.1007/s00606-014-1027-7.Search in Google Scholar

LOONEY, C. E. and K. M. WARING (2013): Pinus strobiformis (southwestern white pine) stand dynamics, regeneration, and disturbance ecology: A review. For. Ecol. Manag. 287: 90-102.Search in Google Scholar

MANLY, B. F. J. (1997): Randomization bootstrap and Monte Carlo methods in biology - Chapman and Hall, London, p 399.Search in Google Scholar

MARQUARDT, P. E. and B. K. EPPERSON (2004): Spatial and population genetic structure of microsatellites in white pine. Mol. Ecol. 13: 3305-3315.Search in Google Scholar

MCCUE, K. A., E. S. BUCKLER and T. P. HOLTSFORD (1996): A hierarchical view of genetic structure in the rare annual plant Clarkia springvillensis. Conserv. Biol. 10: 1425-1434.Search in Google Scholar

MENDOZA-MAYA, E., J. ESPINO-ESPINO, C. Z. QUIÑONESPÉREZ, C. FLORES-LÓPEZ, C. WEHENKEL, J. J. VARGASHERNÁNDEZ and C. SÁENZ-ROMERO (2015): Proposal for conservation of three endangered species of Mexican spruce. Revista Fitotecnia Mexicana: Manuscript submitted.Search in Google Scholar

MOCK, K. E., B. J. BENTZ, E. M. O’NEILL, J. P. CHONG, J. ORWIN and M. E. PFRENDER (2007): Landscape-scale genetic variation in a forest outbreak species, the mountain pine beetle (Dendroctonus ponderosae). Mol. Ecol. 16: 553-568.Search in Google Scholar

NAMROUD, M., J. BEAULIEU, N. JUGE, J. LAROCHE and J. BOUSQUET (2008): Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce. Mol. Ecol. 17: 3599-3613.Search in Google Scholar

NARVÁEZ, F. R. (1984): Contribución al Conocimiento de la Ecología de Picea chihuahuana. Tesis profesional (Biología), Universidad Autónoma de Nuevo León, Facultad de Ciencias Biológicas. Mexico.Search in Google Scholar

NORMA OFICIAL MEXICANA (2010): NOM-059-ECOL-2010. Protección ambiental - Especies nativas de Mexico de flora y fauna silvestres- Categorías de riesgo y especificaciones para su inclusión, exclusión o cambio. Lista de especies en riesgo. Diario Oficial de la Federación (Segunda sección): 1-77.7.Search in Google Scholar

NEI, M. (1972): Genetic distance between populations. Amer. Nat. 106: 283-392.Search in Google Scholar

NEI, M. (1978): Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.10.1093/genetics/89.3.583121385517248844Search in Google Scholar

PEAKALL, R. and P. E. SMOUSE (2012): GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics 28: 2537-2539.10.1093/bioinformatics/bts460346324522820204Search in Google Scholar

QUIÑONES-PÉREZ, C. Z., C. SÁENZ-ROMERO and C. WEHENKEL (2014): Influence of neighbouring tree species on AFLP variants of endangered Picea chihuahuana populations on the Sierra Madre Occidental, Northeastern Mexico. Pol. J. Ecol. 62: 55-65.Search in Google Scholar

QUIÑONES-PÉREZ, C. Z., R. SILVA-FLORES and C. WEHENKEL (2012): Ecology of the Mexican Abies durangensis Martínez. Kastamonu University Journal of Forestry Faculty 12(3): 180-184.Search in Google Scholar

QUIÑONES-PÉREZ, C. Z., C. SÁENZ-ROMERO, and C. WEHENKEL (2014): Genetic diversity and conservation of Picea chihuahuana Martínez: a Review. Afr. J. Biotechnol. 13(28): 2786-2795.10.5897/AJB2014.13645Search in Google Scholar

PETIT, R. J. and A. HAMPE (2006): Some evolutionary consequences of being a tree. Annu. Rev. Ecol. Evol. Syst. 37: 187-214.Search in Google Scholar

RICHARDSON, B. A., G. E. REHFELDT and M. S. KIM (2009): Congruent climate-related genecological responses from molecular markers and quantitative traits for western white pine (Pinus monticola). Int. J. Plant. Sci. 170: 1120-1131.Search in Google Scholar

SÁENZ-ROMERO, C., R. P. GURIES and A. I. MONK (2001): Landscape genetic structure of Pinus banksiana: allozyme variation. Can. J. Bot. 79(8): 871-878.10.1139/cjb-79-8-871Search in Google Scholar

SÁENZ-ROMERO, C. and R. P. GURIES (2002): Landscape genetic structure of Pinus banksiana: seedling traits. Silvae Genet. 51(1): 26-35.Search in Google Scholar

TROUPIN, D., R. NATHAN and G. G. VENDRAMIN (2006): Analysis of spatial genetic structure in an expanding Pinus halepensis population reveals development of fine-scale genetic clustering over time. Mol. Ecol. 15: 3617-3630.10.1111/j.1365-294X.2006.03047.x17032261Search in Google Scholar

VALBUENA-CARABAÑA, M., S. C. GONZÁLEZ-MARTÍNEZ, O. J. HARDY and L. GIL (2007): Fine-scale spatial genetic structure in mixed oak stands with different levels of hybridization. Mol. Ecol. 16: 1207-1219.Search in Google Scholar

VEKEMANS, X. and O. J. HARDY (2004): New insights from fine-scale spatial genetic structure analyses in plant populations. Mol. Ecol. 13: 921-935.Search in Google Scholar

VOS, P., R. HOGERS and M. BLEEKER (1995): AFLP: a new concept for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.10.1093/nar/23.21.44073073977501463Search in Google Scholar

WEHENKEL, C., J. H. MARTÍNEZ-GUERRERO, A. PINEDOALVAREZ and A. CARRILLO (2012): Adaptive genetic differentiation in Picea chihuahuana M. caused by different copper concentrations in the top soil. Forstarchiv 83: 48-51.Search in Google Scholar

WEHENKEL, C. and C. SÁENZ-ROMERO (2012): Estimatinggenetic erosion using the example of Picea chihuahuana Martínez. Tree Genet. Genomes 8: 1085-1094.Search in Google Scholar

WEHENKEL, C., C. SÁENZ-ROMERO and J. P. JARAMILLOCORREA (2014): Estimating genetic erosion in threatened conifers: the example of Picea chihuahuana Martínez, Chapter 15: 20 pages in Ahuja, M. R. and Jain, S.M. (eds.): Genetic Erosion and Biodiversity, Springer SBM, The Netherlands, in press.10.1007/978-3-319-25954-3_7Search in Google Scholar

WRIGHT, S. (1943): Isolation by distance. Genetics 28: 114-138.10.1093/genetics/28.2.114120919617247074Search in Google Scholar