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Genetic Variation in the Qinghai-Tibetan Plateau Endemic and Endangered Conifer Cupressus gigantea, Detected Using RAPD and ISSR Markers


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ALLNUTT, T. R., A. C. NEWTON, A. LARA, A. PREMOLI, J. J. ARMESTO, R. VERGARA and M. GARDNER (1999): Genetic variation in Fitzroya cupressoides (alerce), a threatened South American conifer. Molecular Ecology 8: 975-987.10.1046/j.1365-294x.1999.00650.xSearch in Google Scholar

ALLNUTT, T. R., A. C. NEWTON, A. PREMOLI and A. LARA (2003): Genetic variation in the threatened South American conifer Pilgerodendron uviferum (Cupressaceae), detected using RAPD markers. Biological Conservation 114: 245-253.10.1016/S0006-3207(03)00044-2Search in Google Scholar

BEKESSY, S. A., T. R. ALLNUTT, A. C. PREMOLI, A. LARA, R. A. ENNOS, M. A. BURGMAN, M. CORTES and A. C. NEWTON (2002): Genetic variation in the Monkey Puzzle tree (Araucaria araucana (Molina) K. Koch), detected using RAPD. Heredity 88: 243-249.10.1038/sj.hdy.680003311920130Open DOISearch in Google Scholar

COTTRELL, J. E., V. KRYSTUFEK, H. E. TABBENER, A. D. MILNER, T. CONNOLLY, L. SING, S. FLUCK, K. BURG, F. LEFEVRE and P. ACHARD (2005): Postglacial migration of Populus nigra L.: lessons learnt from chloroplast DNA. Forest Ecology and Management 206: 71-90.10.1016/j.foreco.2004.10.052Search in Google Scholar

DOYLE, J. J. and J. L. DOYLE (1987): A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochemistry Bulletin 19: 11-15.Search in Google Scholar

DUMOLIN-LAPEÁ GUE, S., B. DEMESURE, S. FINESCHI, V. LE CORRE and R. J. PETIT (1997): Phylogeographic structure of white oaks throughout the European continent. Genetics 146: 1475-1487.10.1093/genetics/146.4.147512080909258689Search in Google Scholar

EXCOFFIER, L., P. E. SMOUSE and J. M. QUATTRO (1992): Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-91.10.1093/genetics/131.2.47912050201644282Search in Google Scholar

FRANKHAM, R., J. D. BALLOU and D. A. BRISCOE (2002): Introduction to Conservation Genetics. Cambridge University Press, Cambridge, UK.10.1017/CBO9780511808999Search in Google Scholar

FRITSCH, P. and L. H. RIESEBERG (1996): The use of Random Amplified Polymorphic DNA (RAPD) in conservation genetics, pp. 54-73. In: Molecular Genetic Approaches in Conservation, edited by T. B. SMITH, R. K. WAYNE, Oxford University Press, New York.Search in Google Scholar

FU, L. G. (1995): China Plant Red Data Book. Science Press, Beijing.Search in Google Scholar

FU, L. G., Y. F. YU and A. FARJON (1999): Cupressaceae, 4, pp. 62-65. In: Flora of China, edited by P. H. RAVEN, C.Y. WU,. Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis.Search in Google Scholar

GILLIES, A. C. M., J. P. CORNELIUS, A. C. NEWTON, C. NAVARRO, M. HERNÁNDEZ and J. WILSON (1997): Genetic variation in Costa Rican populations of the tropical timber species Cedrela odorata L. assessed using RAPDs. Molecular Ecology 6: 1133-1145.10.1046/j.1365-294X.1997.00287.xOpen DOISearch in Google Scholar

GILLIES, A. C. M., C. NAVARRO, A. J. LOWE, A. C. NEWTON, M. HERNÁNDEZ, J. WILSON and J. P. CORNELIUS (1999): Genetic diversity in Mesoamerican populations of mahogany (Swietenia macrophylla), assessed using RAPDs. Heredity 83: 722-732.10.1046/j.1365-2540.1999.00626.x10651917Open DOISearch in Google Scholar

HAMRICK, J. L. and M. J. W. GODT (1989): Allozyme diversity in plant species, pp. 43-63 In: Plant Population Genetics, Breeding and Genetic Resources, edited by A. H. D. BROWN, M. T. CLEGG, A. L. KAHLER, B. S. WEIR, Sinauer, Sunderland, MA.Search in Google Scholar

HAMRICK, J. L., M. J. W. GODT and S. L. SHERMAN-BROYLES (1992): Factors influencing levels of genetic diversity in woody plant species. New Forest 6: 95-124.10.1007/BF00120641Open DOISearch in Google Scholar

HEDRICK, P. W. (2004): Recent developments in conservation genetics. Forest Ecology and Management 197: 3-19.10.1016/j.foreco.2004.05.002Search in Google Scholar

HEWITT, G. M. (1996): Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society 58: 247-276.10.1111/j.1095-8312.1996.tb01434.xOpen DOISearch in Google Scholar

HEWITT, G. M. (2000): The genetic legacy of the Quaternary ice ages. Nature 405: 907-913.10.1038/35016000Search in Google Scholar

HUH, M. K. and H.W. HUH (2000): Genetic diversity and population structure of Juniperus rigida (Cupressaceae) and Juniperus coreana. Evolutionary Ecology 14: 87-98.10.1023/A:1011090013749Open DOISearch in Google Scholar

JIMÉNEZ, J. F., O. WERNER, P. SÁNCHEZ-GÓMEZ, S. FERNÁNDEZ and J. GUERRA (2003): Genetic variations and migration pathway of Juniperus thurifera L. (Cupressaceae) in the western Mediterranean region. Israel Journal of Plant Sciences 51: 11-22.10.1560/ABR5-A6MP-5XEG-V0WFOpen DOISearch in Google Scholar

KREMER, A. and M. P. REVIRON (2004): Dynamics and conservation of genetic diversity in forest ecosystems. Forest Ecology and Management 197: 1-2.10.1016/j.foreco.2004.05.001Search in Google Scholar

LEDIG, F. T. (1987): Genetic structure and the conservation of California’s endemic and near-endemic conifers, pp. 587-594. In: Conservation and Management of Rare and Endangered Plants edited by T. S. ELLIS, California Native Plant Society, Sacramento, USA.Search in Google Scholar

LEE, S. W., F. T. LEDIG and D. R. JOHNSON (2002): Genetic variation at allozyme and RAPD markers in Pinus longaeva (Pinaceae) of the white mountains. California. American Journal of Botany 89: 566-577.10.3732/ajb.89.4.566Search in Google Scholar

MILLER, M. P. (1998): AMOVA-PREP 1.01: A program for the preparation of AMOVA input files from dominantmarkers raw data. Computer software distributed by author.Search in Google Scholar

MYERS, N., R. A. MITTERMEIER, C. G. MITTERMEIER, G. A. B. DA FONSECA and J. KENT (2000): Biodiversity hotspots for conservation priorities. Nature 403: 853-858.10.1038/35002501Search in Google Scholar

NAEP (National Administration of Environmental Protection), IBCAS (Institute of Botany, Chinese Academy of Sciences), 1987. The List of Rare and Endangered Plants Protected in China, Science Press, Beijing.Search in Google Scholar

NEI, M. (1973): Analysis of gene diversity in subdivided populations. Proceedings of the National Academic Sciences USA 70: 3321-3323.10.1073/pnas.70.12.3321Search in Google Scholar

NEWTON, A. C., T. ALLNUTT, A. C. M. GILLIES, A. LOWE and R. A. ENNOS (1999): Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends Ecology and Evolution 14: 140-145.10.1016/S0169-5347(98)01555-9Open DOISearch in Google Scholar

NYBOM, H. and I. BARTISH (2000): Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspectives in Plant Ecology, Evolution and Systematics 3: 93-114.10.1078/1433-8319-00006Open DOISearch in Google Scholar

NYBOM, H. (2004): Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Molecular Ecology 13: 1143-1155.10.1111/j.1365-294X.2004.02141.xOpen DOISearch in Google Scholar

PETIT, R. J., R. BIALOZYT, P. GARNIER-GÉRÉAND and A. HAMPE (2004): Ecology and genetics of tree invasions: from recent introductions to Quaternary migrations. Forest Ecology and Management 197: 117-137.10.1016/j.foreco.2004.05.009Search in Google Scholar

PETIT, R. J., J. DUMINIL, S. FINESCHI, A. HAMPE, D. SALVINI and G. G. VENDRAMIN (2005): Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology 14: 689-701.10.1111/j.1365-294X.2004.02410.xOpen DOISearch in Google Scholar

QIAN, W., S. GE and D.Y. HONG (2001): Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers. Theoretical and Applied Genetics 102: 440-449.10.1007/s001220051665Open DOISearch in Google Scholar

RADDI, S. and S. SUEMER (1999): Genetic diversity in natural Cupressus sempervirens L. populations in Turkey. Biochemical Systematics and Ecology 27: 799-814.10.1016/S0305-1978(99)00028-9Open DOISearch in Google Scholar

REED, D. H. (2003): Correlation between fitness and genetic diversity. Conservation Biology 17: 230-237.10.1046/j.1523-1739.2003.01236.xOpen DOISearch in Google Scholar

ROHLF, F. J. (1998): NTSYS-pc 2. Numerical Taxonomy and Multivariate Analysis System. Exeter Software, New York.Search in Google Scholar

WANG, D. L., Z. C. LI, G. HAO, T.Y. CHIANG and X. J. GE (2004): Genetic diversity of Calocedrus macrolepis (Cupressaceae) in southwestern China. Biochemical Systematics and Ecology 32: 797-807.10.1016/j.bse.2003.12.003Open DOISearch in Google Scholar

WANG, X. R. and A. E. SZMIDT (2001): Molecular markers in population genetics of forest trees. Scandinavian Journal of Forest Research 16: 199-220.10.1080/02827580118146Open DOISearch in Google Scholar

WEBER, J. L. and P. E. MAY (1989): Abundant class of human DNA polymorphism which can be typed using the polymerase chain reaction. American Journal of Human Genetics 44: 388-396.Search in Google Scholar

WOLFE, A. D., Q. Y. XIANG and S. R. KEPHART (1998): Assessing hybridization in natural population of Penstemon (Scrophulariaceae) using hypervariable intersimple sequence repeat (ISSR) bands. Molecular Ecology 7: 1107-1125.10.1046/j.1365-294x.1998.00425.x9734070Open DOISearch in Google Scholar

YEH, F. C., R. YANG and T. BOYLE (1999): POPGENE. Microsoft Windows-based freeware for population genetic analysis. Release 1.31. University of Alberta, Edmonton, Canada.Search in Google Scholar

ZHANG, Q., T. Y. CHIANG, G. MIEHE, J. Q. LIU and R. ABBOTT (2005): Phylogeography of the Qinghai-Tibetan Plateau endemic Juniperus przewalskii inferred from chloroplast sequence variation. Molecular Ecology 14: 3513-3524.10.1111/j.1365-294X.2005.02677.x16156819Open DOISearch in Google Scholar

eISSN:
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Life Sciences, Molecular Biology, Genetics, Biotechnology, Plant Science