Application of selected molecular markers in studies on forest trees

Avise J.C. 1994. Molecular Markers, Natural History, and Evolution. Chapman & Hall, New York. 10.1007/978-1-4615-2381-9Search in Google Scholar

Berg J.J., Coop G. 2014. A population genetic signal of polygenic adaptation. PLoS Genetics, 10 (8), e1004412.Search in Google Scholar

Chagne D., Lalanne C., Madur D., Kumar S., Frigérioa J.-M., Kriera C., Decroocqa S., Savouréc A., Bou-Dagher-Kharratc M., Bertocchia E., Bracha J., Plomion C. 2002. A high density linkage map of Pinus pinaster based on AFLPs. Annals of Forest Science, 59, 627-636.Search in Google Scholar

Chagné D., Chaumeil P., Ramboer A., Collada C., Guevara A., Cervera M.T., Vendramin G.G., Garcia V., Frigerio J.-M., Echt C., Richardson T., Plomion C. 2004. Cross-species transferability and mapping of genomic and cDNA SSRs in pines. Theoretical and Applied Genetics, 109 (6), 1204-1214.Search in Google Scholar

Chancerel E., Lamy J.B., Lesur I., Noirot C., Klopp C., Ehrenmann F., Boury C., Le Provost G., Label P., Lalanne C., Léger V., Salin F., Gion J.-M., Plomion C. 2013. High density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination. BMC Biology, 11, 50.10.1186/1741-7007-11-50366019323597128Search in Google Scholar

Cullingham C.I., Cooke J.E.K., Dang S., Coltman D.W. 2013. A species-diagnostic SNP panel for discriminating lodgepole pine, jack pine, and their interspecific hybrids. Tree Genetics and Genomes, 9 (4), 1119-1127.Search in Google Scholar

Eckert A.J., Pande B., Ersoz E.S., Wright M.H., Rashbrook V.K., Nicolet C.M, Neale D.B. 2009. Highthroughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.). Tree Genetics and Genomes, 5, 225-234.Search in Google Scholar

Edwards K.J., Mogg R. 2001. Plant genotyping by analysis of single nucleotide polymorphisms. Plant Genotyping: The DNA Fingerprinting of Plants. Henry RJ. Wallingford, CABI, 1-13.Search in Google Scholar

Ellegren H. 2004. Microsatellites: simple sequences with complex evolution. Nature Reviews Genetics, 5, 435-445. DOI: 10.1038/nrg1348.10.1038/nrg134815153996Search in Google Scholar

Elsik C.G., Williams C.G. 2000. Retroelements contribute to the excess low-copy-number DNA in pine. Molecular and General Genetics, 264 (1/2), 47-55.Search in Google Scholar

Feder M.E., Mitchell-Olds T. 2003. Evolutionary and ecological functional genomics. Nature Reviews Genetics, 4, 651-657.Search in Google Scholar

Giertych M. 1979. Summary of results on Scots pine (Pinus sylvestris L.) height growth in IUFRO provenance experiment. Silvae Genetica, 28 (4), 136-152.Search in Google Scholar

González-Martínez S.C., Wheeler N.C., Ersoz E., Nelson C.D., Neale D.B. 2007. Association Genetics in Pinus taeda L. I. Wood Property Traits. Genetics, 175 (1), 399-409.Search in Google Scholar

Guan L., Suharyanto, Shiraishi S. 2011. Isolation and characterization of tetranucleotide microsatellite loci in Pinus massoniana (Pinaceae). American Journal of Botany, 98, e216-e217. DOI: 10.3732/ajb.1100076.10.3732/ajb.110007621795729Search in Google Scholar

Hansen O.K., Kjaer E.D. 2006. Paternity analysis with microsatellites in a Danish Abies nordmanniana clonal seed orchard reveals dysfunctions. Canadian Journal of Forest Research, 36, 1054-1058.Search in Google Scholar

Jaworski A. 2011. Hodowla lasu. Charakterystyka hodowlana drzew i krzewów leśnych. PWRiL, Warszawa. Search in Google Scholar

Liu J.-J., Sniezko R.A., Sturrock R.N., Chen H. 2014. Western white pine SNP discovery and highthroughput genotyping for breeding and conservation applications. BMC Plant Biology, 14, 1586.Search in Google Scholar

Moriguchi Y., Yamazaki Y., Taira H., Tsumura Y. 2010. Mating patterns in an indoor miniature Cryptomeria japonica seed orchard as revealed by microsatellite markers. New Forest, 39, 261-273. DOI: 10.1007/s11056-009-9169-0.10.1007/s11056-009-9169-0Search in Google Scholar

Munyard K.A., Ledger J.M., Lee C.Y., Babra C., Groth D.M. 2009. Characterization and multiplex genotyping of alpaca tetranucleotide microsatellite markers. Small Ruminant Research, 85 (2/3), 153-156. DOI: 10.1016/j.smallrumres.2009.07.012.10.1016/j.smallrumres.2009.07.012Search in Google Scholar

Murray B.G. 1998. Nuclear DNA Amounts in Gymnosperms. Annals of Botany, 82 (Supplement A), 3-15.Search in Google Scholar

Nystedt B., Street N.R., Wetterbom A., Zuccolo A., Lin Y.-C., Scofield D.G., Vezzi F., Delhomme N., Giacomello S., Alexeyenko A., Vicedomini R., Sahlin K., Sherwood E., Elfstrand M., Gramzow L., Holmberg K., Hällman J., Keech O., Klasson L., Koriabine M., Kucukoglu M., Käller M., Luthman J., Lysholm F., Niittylä T., Olson Å., Rilakovic N., Ritland C., Rosselló J.A., Sena J., Svensson T., Talavera-López C., Theissen G., Tuominen H., Vanneste K., Wu Z.-Q., Zhang B., Zerbe P., Arvestad L., Bhalerao R., Bohlmann J., Bousquet J., Garcia Gil R., Hvidsten T.R., de Jong P., MacKay J., Morgante M., Ritland K., Sundberg B., Lee Thompson S., Van de Peer Y., Andersson B., Nilsson O., Ingvarsson P.K., Lundeberg J. Jansson S. 2013. The Norway spruce genome sequence and conifer genome evolution. Nature, 497, 579-584.Search in Google Scholar

Pavy N., Pelgas B., Beauseigle S., Blais S., Gagnon F., Gosselin I., Lamothe M., Isabel N., Bousquet J. 2008. Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce. BMC Genomics, 9, 21.10.1186/1471-2164-9-21224611318205909Search in Google Scholar

Plomion C., Bartholomé J., Lesur I., Boury C., Rodríguez-Quilón I., Lagraulet H., Ehrenmann F., Bouffier L., Gion J.M., Grivet D., de Miguel M., de María N., Cervera M.T., Bagnoli F., Isik F., Vendramin G.G., González-Martínez S.C. 2016. Highdensity SNP assay development for genetic analysis in maritime pine (Pinus pinaster). Molecular Ecology Resources, 16 (2), 574-587.Search in Google Scholar

Rafalski A. 2002. Applications of single nucleotide polymorphisms in crop genetics. Current Opinion in Plant Biology, 5 (2), 94-100.Search in Google Scholar

Ryynänen H.J., Tonteri A., Vasemägi A., Primmer C.R. 2007. A comparison of biallelic markers and microsatellites for the estimation of population and conservation genetic parameters in Atlantic salmon (Salmo salar). Journal of Heredity, 98 (7), 692-704.10.1093/jhered/esm09317986472Search in Google Scholar

Slavov G.T., Howe G.T., Adams W.T. 2005. Pollen contamination and mating patterns in a Douglas- fir seed orchard as measured by simple sequence repeat markers. Canadian Journal of Forest Research, 35, 1592-1603. DOI: 10.1139/x05-082.10.1139/x05-082Search in Google Scholar

Suharyanto, Nose M., Shiraishi S. 2012. Development and application of a multiplex SNP system to evaluate the mating dynamics of Pinus thunbergii clonal seed orchards. Molecular Breeding, 30, 1465. DOI: 10.1007/s11032-012-9733-8.10.1007/s11032-012-9733-8Search in Google Scholar

Wachowiak W., Salmela M.J., Ennos R.A., Iason G., Cavers S. 2011. High genetic diversity at the extreme range edge: nucleotide variation at nuclear loci in Scots pine (Pinus sylvestris L.) in Scotland. Heredity, 106 (5), 775-87. DOI: 10.1038/hdy.2010.118.10.1038/hdy.2010.118318624120823905Search in Google Scholar

Wachowiak W. 2015. Genetic relationships between Polish and reference populations of Scots pine (Pinus sylvestris L.) in Europe based on nucleotide polymorphism study at nuclear loci. Sylwan, 159 (1), 53-61.Search in Google Scholar

Weller J.I., Seroussi E., Ron M. 2006. Estimation of the number of genetic markers required for individual animal identification accounting for genotyping errors. Animal Genetics, 37, 387-389. DOI: 10.1111/j.1365-2052.2006.01455.x.10.1111/j.1365-2052.2006.01455.x16879353Search in Google Scholar

Werner F.A., Durstewitz G., Habermann F.A., Thaller G., Kramer W., Kollers S., Buitkamp J., Georges M., Brem G., Mosner J., Fries R. 2004. Detection and characterization of SNPs useful for ID control and parentage testing in major European dairy breeds. Animal Genetics, 35, 44-49. DOI: 10.1046/j.1365-2052.2003.01071.x.10.1046/j.1365-2052.2003.01071.x14731229Search in Google Scholar

Williams C., Williamson R., Coutelle C., Loeffler F., Smith J., Ivinson A. 1988. Same-day, first-trimester antenatal diagnosis for cystic fibrosis by gene amplification. Lancet, 2 (8602), 102-103.Search in Google Scholar

Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18 (22), 6531-6535. DOI: 10.1093/nar/18.22.6531.10.1093/nar/18.22.65313326061979162Search in Google Scholar

Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Friters A., Pot J., Paleman J., Kuiper M., Zabeau M. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23 (21), 4407-4414. DOI: 10.1093/nar/23.21.440710.1093/nar/23.21.44073073977501463Search in Google Scholar