Genetic Diversity in the mtDNA control region and population structure of Chrysichthys nigrodigitatus from selected Nigerian rivers: Implications for conservation and aquaculture

Adeyemo O.K. 2003 – Consequences of pollution and degradation of Nigerian aquatic environment on fisheries resources – The Environmentalist 23: 297-306.10.1023/B:ENVR.0000031357.89548.fbSearch in Google Scholar

Agnese J.F. 2000 – Genetic differentiation in West African lagoon fishes – In: Biodiversity and sustainable use offish in the coastal zone (Eds) E.K. Abban, C.M.V: Casal, T.M. Falk, R.S.V. Pullin, ICIARM Conf. Proc. 63: 17-22.Search in Google Scholar

Alves M.J., Coelho H., Collares-Pereira M.J., Coelho M.M. 2001 – Mitochondrial DNA variation in the highly endangered cyprinid fish Anaecypris hispanica: importance for conservation – Heredity 87: 463-473.10.1046/j.1365-2540.2001.00929.xSearch in Google Scholar

Avise J.C. 2000 – Phylogeography: The history and formation of species – Harvard Uinversity Press, Cambridge, Massachusetts London, England, 352 p.Search in Google Scholar

Batista J.S., Alves-Gomes A.J. 2006 – Phylogeography of Brachyplatystoma rousseauxii (Siluriformes - Pimelodidae) in the Amazon Basin offers preliminary evidence for the first case of “homing” for an Amazonian migratory catfish – Genet. Mol. Res. 5: 723-740.Search in Google Scholar

Bickham J.W., Smolen M.J. 1994 – Somatic and heritable effects of environmental genotoxins and emergence of evolutionary toxicology – Environ. Health. Perspect. 102 (Suppl 12): 25-28.10.1289/ehp.94102s1225Search in Google Scholar

Bickham J.W., Sandhu S, Hebert P.D.N., Chikhi L., Athwal R. 2000 – Effects of chemical contaminants on genetic diversity in natural populations: implications for biomonitoring and ecotoxicology – Mutat. Res. 463: 33-51.10.1016/S1383-5742(00)00004-1Search in Google Scholar

Billington N., Hebert P.D.N 1991 – Mitochondrial DNA diversity in fishes and its implications for introductions – Can. J. Fish. Aquat. Sci. 48: 80-94.10.1139/f91-306Search in Google Scholar

Buonnacorsi V.P., McDowell J.R., Graves J.E. 2001 – Reconciling patterns of inter-ocean molecular variance from four classes of molecular markers in blue marlin (Makaira nigricans) – Mol. Ecol. 10: 1179-1196.10.1046/j.1365-294X.2001.01270.x11380876Search in Google Scholar

Cho E.S. Kim J.I. 2006 – Mitochondrial DNA polymorphism of the Japanese anchovy (Engraulis japonicus Temminck & Schlegel) collected from the Korean offshore and inshore waters – J. Life Sci. 16: 812-827.10.5352/JLS.2006.16.5.812Search in Google Scholar

Erondu S.E. 1997 – Aspects of the biology of Chrysichthys nigrodigitatus (Lacepede) in the New Calabar River and its aquaculture potentials – Ph. D thesis, University of Nigeria, Nsukka, Nigeria.Search in Google Scholar

Excoffier L., Smouse P.E. 1994 – Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony – Genetics 136: 343-359.10.1093/genetics/136.1.34312057858138170Search in Google Scholar

Excoffier L., Laval G., Schneider S. 2005 – ARLEQUIN (version 3.0): An integrated software package for population genetics data analysis – Evol. Bioinform. Online 1: 47-50.10.1177/117693430500100003Search in Google Scholar

Excoffier L., Smouse P.E., Quattro J.M. 1992 – Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data – Genetics 131: 479-491.10.1093/genetics/131.2.47912050201644282Search in Google Scholar

Ezenwa B. 1981 – A study of the reproductive biology of the catfish, Chrysichthys nigrodigitatus (Lacepede) in Nigeria – Ph.D thesis, University of Lagos, 178 p.Search in Google Scholar

Ezenwa B., Ikusemiju L., Olaniyan C.I.O. 1986 – Comparative studies of the catfish, Chrysichthys nigrodigitatus (Lacépéde) in three isolated geographical areas in Nigeria for breeding purposes – In: Aquaculture research in the Africa region (Ed.) E.A. Huisman, Wageningen, The Netherlands: 258-262.Search in Google Scholar

Fu Y.X. 1997 – Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection – Genetics 147: 915-925.Search in Google Scholar

Glenn T.C., Stephan W., Braun M.J. 1999 – Effects of a population bottleneck on whooping crane mitochondrial DNA variation – Conserv. Biol. 13: 1097-1107.10.1046/j.1523-1739.1999.97527.xSearch in Google Scholar

Gyllensten U. 1985 – The genetic structure of fish: differences in the intraspecific distribution of biochemical genetic variation between marine, anadromous, and freshwater species – J. Fish Biol. 26: 691-699.10.1111/j.1095-8649.1985.tb04309.xSearch in Google Scholar

Harpending H.C. 1994 – Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution – Hum. Biol. 66: 591-600.Search in Google Scholar

Harpending H.C., Sherry S.T., Rogers A.R., Stoneking M. 1993 – The genetic structure of ancient human populations – Curr. Anthropol. 34: 483-496.10.1086/204195Search in Google Scholar

Hewitt G.M. 1996 – Some genetic consequences of ice ages, and their role in divergence and speciation – Biol. J. Linn. Soc. 58: 247-276.Search in Google Scholar

Hewitt G.M. 2000 – The genetic legacy of the Quaternary ice ages – Nature 405: 907-913.10.1038/3501600010879524Search in Google Scholar

Iguchi K., Ohkawa T., Nishida M. 2002 – Genetic structure of land-locked ayu within the Biwa Lake system – Fisheries Science 68: 138-143.10.1046/j.1444-2906.2002.00399.xSearch in Google Scholar

Kimura M. 1980 – A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences – J. Mol. Evol. 16: 111-120.10.1007/BF017315817463489Search in Google Scholar

Koblmüller S., Sefc K.M., Duftner N., Warum M., Sturmbauer C. 2007 – Genetic population structure as indirect measure of dispersal ability in a Lake Tanganyika cichlid – Genetica 130: 121-131.10.1007/s10709-006-0027-016897454Search in Google Scholar

Kotoulas G., Agnèse J-F., Zouros E. 1991 – Microsatellite variation in the African catfish Chrysichthys nigrodigitatus (LACEPEDE) (Siluroidei, Claroteidae) – Aquacult. Fish. Manage. 22: 285-288.Search in Google Scholar

Knight J.T., Nock C.J., Elphinstone M.S., Baverstock P.R. 2009 – Conservation implications of distinct genetic structuring in the endangered freshwater fish Nannoperca oxleyana (Percichthyidae) – Mar. Freshw. Res. 60: 34-44.10.1071/MF08022Search in Google Scholar

Kumar S., Tamura K., Jakobsen I.B., Nei M. 2001 – MEGA2: molecular evolutionary genetics analysis software – Bioinformatics 17: 1244-1245.10.1093/bioinformatics/17.12.124411751241Search in Google Scholar

Lavery S., Moritz C., Fielder D.R. 1996 – Genetic patterns suggest exponential population growth in a declining species – Mol. Biol. Evol. 13: 1106-1113.10.1093/oxfordjournals.molbev.a025672Search in Google Scholar

Lee W.J., Conroy J., Howell W.H., Kocher T.D. 1995 – Structure and evolution of teleost mitochondrial control regions – J. Mol. Evol. 41: 54-66.10.1007/BF001740417608989Search in Google Scholar

Lévêque C. 1997 – Biodiversity Dynamics and Conservation: The Freshwater Fish of Tropical Africa – Cambridge University Press, Cambridge, 438 p.Search in Google Scholar

Librado P., Rozas J. 2009 – DnaSP v5: a software for comprehensive analysis of DNA polymorphism data – Bioinformatics 25: 1452-1452.10.1093/bioinformatics/btp18719346325Search in Google Scholar

Mazumder S.K., Alam M.S. 2009 – High levels of genetic variability and differentiation in hilsa shad, Tenualosa ilisha (Clupeidae, Clupeiformes) populations revealed by PCR-RFLP analysis of the mitochondrial DNA D-loop region – Genet. Mol. Biol. 32: 190-196.Search in Google Scholar

Mo T. 1991 – Anatomy, relationships and systematic of the Bagridae (Teleostei: Siluroidei) with a hypothesis of siluroid phylogeny – Thesis Zoologie 17, Koeltz Scientific Books, Koenigstein, 216 p.Search in Google Scholar

Moses B.S. 1979 – The Cross River, its ecology and fisheries – Proceedings of the International Conference on Kainji Lake and River Basin Development in Africa, 22-25.09.1979, Kainji Lake Research Institute (KLRI), New Bussa, Niger, 366-371.Search in Google Scholar

Moses B.S. 1987 – The influence of flood regime on fish catch and fish communities of the Cross River floodplain ecosystem, Nigeria – Environ. Biol. Fish. 18: 51-65.Search in Google Scholar

Moses B.S. 2001 – The influence of hydroregime on catch, abundance and recruitment of the catfish Chrysichthys nigrodigitatus (Bagridae) and the bonga Ethmalosa fimbriata (Clupeidae) of southeastern Nigeria’s inshore waters – Environ. Biol. Fish. 61: 99-109.Search in Google Scholar

Nwafili S.A. 1997 – Fisheries survey of Shiroro Lake, Niger State – M. Tech Thesis, Federal University of Technology, Minna, Nigeria, 98 p.Search in Google Scholar

Nwafili S.A., Soyinka O.O., Gao T.X. 2012 – Levels and patterns of genetic diversity in wild Chrysichthys nigrodigitatus in the Lagos Lagoon complex – Afr. J. Biotechnol. 11: 15748-15754.10.5897/AJB10.1258Search in Google Scholar

Nwafili S.A., Guijing R., Xiang G.T. 2015 – Microsatellite Analysis of Six Populations of Chrysichthys nigrodigitatus from Nigeria – Annual Res. Rev. Biol. 5: 544-55210.9734/ARRB/2015/9638Search in Google Scholar

Obiekezie A.I., Enyenihi U.K. 1988 – Henneguya chrysichthyi sp. nov. (Protozoa: Myxozoa) from the gills of estuarine catfish Chrysichthys nigrodigitatus (Lacépéde). (Pisces: Bagridae) in Nigeria – J. Afr. Zool. 102: 33-42.Search in Google Scholar

Ovenden J.R., Street R. 2003 – Genetic population structure of mangrove jack, Lutjanus argentimaculatus (Forskåll) – Mar. Freshwater Res. 54: 127-137.Search in Google Scholar

Posada D., Crandall K.A. 1998 – Model test: testing the model of DNA substitution – Bioinformatics 14: 817-818.10.1093/bioinformatics/14.9.8179918953Search in Google Scholar

Rogers A.R., Harpending H.C. 1992 – Population growth makes waves in the distribution of pairwise genetic differences – Mol. Biol. Evol. 9: 552-569.Search in Google Scholar

Santos M.C.F., Ruffino M.L., Farias J.P. 2007 – High levels of genetic variability and panmixia of the tambaqui Colossoma macropomum (Cuvier, 1816) in the main channel of the Amazon River – J. Fish Biol. 71(Suppl.): 33-44.Search in Google Scholar

Sefc K.M., Baric S., Salzburger W., Sturmbauer C. 2007 – Species-specific population structure in rock-specialized sympatric cichlid species in Lake Tanganyika, East Africa – J. Mol. Evol. 64: 33-49.10.1007/s00239-006-0011-417160645Search in Google Scholar

Sivalingam S. 1975 – The biology of cultivable brackishwater and marine finfish in Africa – Symposium on aquaculture in Africa, Accra, Ghana. CIFA/IA (Suppl. 1), 204-291.Search in Google Scholar

Slatkin M. 1985 – Gene flow in natural populations – Annu. Rev. Ecol. S. 16: 393-430.10.1146/annurev.es.16.110185.002141Search in Google Scholar

Song N., Nwafili S.A., Gao T.X. 2011 – Genetic diversity and population structure of Chrysichthys nigrodigitatus from Niger Delta based on AFLP analysis – Biochem. Syst. Ecol. 39: 320-327.10.1016/j.bse.2011.04.002Search in Google Scholar

Swofford D.L. 1998 – PAUP. Phylogenetic analysis using parsimony (and other methods). Version 4 – Sinauer Associates, Sunderland, MA.Search in Google Scholar

Tajima F. 1989 – Statistical method for testing the neutral mutation hypothesis by DNA polymorphism – Genetics 123: 585-595.10.1093/genetics/123.3.58512038312513255Search in Google Scholar

Teugels G.G. 1996 – Taxonomy, phylogeny and biogeography of catfishes (Ostariophysi; Siluroidei): an overview – Aquat. Living Resour. 9: 9-34.Search in Google Scholar

Tsipas G., Tsiamis G., Vidalis K., Bourtzis K. 2009 – Genetic differentiation among Greek Lake populations of Carssius gibelio and Cyprinus carpio carpio – Genetica 139: 491-500.10.1007/s10709-008-9331-119005765Search in Google Scholar

Wang, M., Zhang X., Yang T., Han Z., Yanagimoto T., Gao T. 2008 – Genetic diversity in the mtDNA control region and population structure in the Sardinella zunasi Bleeker – Afr. J. Biotechnol. 24: 4384-4392.Search in Google Scholar

Ward R.D., Woodwark M., Skibinski O.F. 1994 – A comparison of genetic diversity levels in marine, freshwater and anadromous fishes – J. Fish Biol. 44: 213-232.Search in Google Scholar

Watanabe K., Nishida M. 2003 – Genetic population structure of Japanese bagrid catfishes – Ichthyol. Res. 50: 140-148.10.1007/s10228-002-0149-zSearch in Google Scholar

Watanabe S., Iida M., Kimura Y., Feunteun E., Tsukamoto K. 2006 – Genetic diversity of Sicyopterus japonicus as revealed by mtDNA sequencing – Coast. Mar. Sci. 30: 473-479.Search in Google Scholar