Search Results

You are looking at 1 - 10 of 89 items for :

  • genome assembly x
Clear All
Open access

Malte Mader, Marie-Christine Le Paslier, Rémi Bounon, Aurélie Bérard, Patricia Faivre Rampant, Matthias Fladung, Jean-Charles Leplé and Birgit Kersten

-Nuñez F, Soolanayakanahally RY, Stanton B, Guy RD, Mansfield SD, Douglas CJ, Cronk QC (2015) Recent Y chromosome divergence despite ancient origin of dioecy in poplars ( Populus ). Mol Ecol 24 (13):3243-3256. http://dx.doi.org/10.1111/mec.13126 Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29 (8):1072-1107. http://dx.doi.org/10.1093/bioinformatics/btt086 Jansson S, Douglas CJ (2007) Populus : A model system for plant biology. Annu Rev Plant Biol 58:435-458. http://dx.doi.org/10

Open access

Jacek Blazewicz, Wojciech Frohmberg, Piotr Gawron, Marta Kasprzak, Michal Kierzynka, Aleksandra Swiercz and Pawel Wojciechowski

References [1] J. Bang-Jensen and G. Gutin, Digraphs. Theory, Algorithms and Applications, Springer-Verlag (2007). [2] J. Blazewicz, M. Bryja, M. Figlerowicz, P. Gawron, M. Kasprzak, E. Kirton, D. Platt, J. Przybytek, A. Swiercz, and L. Szajkowski, Whole genome assembly from 454 sequencing output via modied DNA graph concept, Computational Biology and Chemistry 33 (2009) 224{230. [3] J. Blazewicz, P. Formanowicz, M. Kasprzak, W.T. Markiewicz, and A. Swiercz, Tabu search algorithm for DNA sequencing by

Open access

Marta Budziszewska and Aleksandra Obrępalska-Stęplowska

.A., Alfaro-Fernández A., Cordoba-Selles M.C., Cebrian M.C., Font M.I., Jorda C. 2009. First report of Tomato torrado virus infecting tomato in single and mixed infections with Cucumber mosaic virus in Panama. Plant Dis. 93 (2): 198. Hull R. 2001. Matthews ’ Plant Virology. 4th ed. Academic Press, San Diego, 1001 pp. Mateu M.G. 2013. Assembly, stability and dynamics of virus capsids. Arch . Biochem . Biophys. 531 (1-2): 65-79. Pospieszny H., Borodynko N., Hasiów B., Obrępalska- Stęplowska A., Budziszewska M. 2008

Open access

Baoquan Hu, Bin Wang, Chunguo Wang, Wenqin Song and Chengbin Chen

References ANDORF, S., J. SELBIG, T. ALTMANN, K. POOS, H. WITUCKAWALL and D. REPSILBER (2010): Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis. Theor Appl Genet 120 (2): 249-259. AINSWORTH, E. A. and D. R. BUSH (2011): Carbohydrate export from the leaf: a highly regulated process and target to enhance photosynthesis and productivity. Plant Physiol 155: 64-69. ANDERSSON-GUNNERAS, S., E. J

Open access

D. Hering, M. Lecewicz, W. Kordan and S. Kaminski

isoforms. DNA Cell Biol 19: 765-773. Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marc¸ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL (2009) A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol 10: R42.

Open access

Pawel Wojciechowski, Wojciech Frohmberg, Michal Kierzynka, Piotr Zurkowski and Jacek Blazewicz

nucleotide reads, Bulletin of the Polish Academy of Sciences Technical Sciences , 61 , 4, 2013, 989–992. [7] Holtgrewe, M., Mason – a read simulator for second generation sequencing data, Technical Report Institut für Mathematik und Informatik, Freie Universität Berlin , TR-B-10-06, 2010. [8] Holtgrewe, M., Emde, A.-K., Weese, D., Reinert, K., A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping BMC Bioinformatics , 12 , 210, 2011. [9] Kierzynka, M., GPU-accelerated graph construction for the whole genome assembly, Phd

Open access

Kevan M.A. Gartland, Munis Dundar, Tommaso Beccari, Mariapia Viola Magni and Jill S. Gartland

References 1. Fleischmann RD, Adams MD, White O, Clayton RA. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 1995; 269: 496-512. 2. C. elegans Sequencing Consortium. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 1998; 282: 2012-2018. 3. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R. Initial sequencing and analysis of the human genome. Nature, 2001; 409: 860

Open access

Miodrag Gužvić

, Kirkness EF, Kerlavage AR, et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 1995; 269: 496-512. 16. Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, et al. Life with 6000 genes. Science 1996; 274: 546, 563-47. 17. TCESC. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 1998; 282: 2012-8. 18. TAGI. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000; 408: 796-815. 19. Adams MD

Open access

M. Fladung, H. Kaufmann, T. Markussen and H. Hoenicka

-002. CERVERA, M. T., M. M. SEWELL, P. FAIVRE-RAMPANT, V. STORME and W. BOERJAN (2004): Genome mapping in Populus. In: KUMAR, S., FLADUNG, M. (Eds) Molecular Genetics and Breeding of Forest Trees. The Haworth Press, Binghamton, 387-410. CERVERA, M. T., V. STORME, B. IVENS, J. GUSMÃO, B. H. LIU, V. HOSTYN, J. VAN SLYCKEN, M. VAN MONTAGU and W. BOERJAN (2001): Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics 158: 787-809. CLARKE, L. and J

Open access

Murugan Sumathi and Yasodha Ramasamy

gene genealogy analyses reveal about homoplasy in citrus microsatellite alleles. Plant Systematics and Evolution 282, 71 Bartholome J., Mandrou E., Mabiala A., Jenkins J., Nabihoudine I., Klopp C., Schmutz J., Plomion C., Gion J. M., 2015: Highresolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly. New Phytologist 206, 1283-1296. Bhargava A., Fuentes F. F., 2010: Mutational dynamics of microsatellites. Molecular Biotechnology 44, 250-266. Brondani R. P. V., Williams E. R., Brondani C