The article presents a numerical model designed for determining groundwater dynamics and water balance of the catchments of the Oziąbel (Czarna Woda) river and the Wołczyński Strumień river in Wołczyn region. Hydrogeological mapping and modelling research covered the area of 238.9 km2. As a result of measurements performed in 2008-2009, flows were determined in major rivers and water table positions were measured at 26 points. In the major part of the area described, the water table, lying at the depth of 1.5-18.7 m, has unconfined character, and the aquifer is built of Neogene (Quaternary) sands and gravels. In the area under study, groundwaters are drawn from 6 wells with total withdrawal of 6133 m3/d. The numerical modelling was performed with the use of Visual Modflow 3.1.0 software. The area was partitioned by a discretization grid with a step size l = 250 m. The conceptual model of the hydrogeological system is based on hydrological data gathered over a period of one year, data from HYDRO bank database, cross-sections and maps. The boundaries of the modelled hydrogeological system were established on the watersheds of the Wołczyński Strumień river and the Oziąbel river, apart from the areas where they run together. The modelled area was extended (271.5 km2) around the Wołczyński Strumień river catchment to achieve a more effective mapping of the anthropogenic impact on its balance and the hydrodynamic system of the catchment area. The structure is characterised by the occurrence of one or rarely two aquifers separated by a pack of Quaternary clays. The investigation produced a detailed water balance and its components.