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In silico analysis of virulence associated genes in genomes of Escherichia coli strains causing colibacillosis in poultry

-associated genes in avian pathogenic Escherichia coli by multiplex polymerase chain reaction. Avian Dis 2005, 49, 269–273. 5. Ge X.Z., Jiang J., Pan Z., Hu L., Wang S., Wang H., Fan H.: Comparative genomic analysis shows that avian pathogenic Escherichia coli isolate IMT5155 (O2:K1:H5; ST complex 95, ST140) shares close relationship with ST95 APEC O1: K1 and human ExPEC O18:K1 strains. PloS One 2014, 9, e112048. 6. Giufré M., Accogli M., Graziani C., Busani L., Cerquetti M.: Whole-genome sequences of multidrug-resistant Escherichia coli strains sharing the same

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Evolution of Genome Size in Conifers

References ADAMS, M. C., S. E. CELNIKER and R. A. HOLT et al. (2000): The genome sequence of Drosophila melanogaster. Science 287: 2185-2195. AHUJA, M. R. (2001): Recent advances in molecular genetics of forest trees. Euphytica 121: 173-195. AHUJA, M. R. (2005): Polyploidy in gymnosperms: Revisited. Silvae Genet. 54: 59-69. AHUJA, M, R., M. E. DEVEY, A. T. GROVER, K. D. JERMSTAD and D. B. NEALE (1994): Mapped DNA probes from loblolly pine can be used for restriction fragment length polymorphism

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Analysis of bovine tuberculosis transmission in Jalisco, Mexico through whole-genome sequencing

and whole-genome sequencing (WGS). Material and Methods Study area . For this project, four abattoirs in the region of Altos Sur ( Fig. 1 ), in the state of Jalisco, Mexico, were included for sampling. These were within three main municipalities: Tepatitlán de Morelos, San Miguel el Alto, and Arandas. These abattoirs were chosen because most of the cattle from the region are taken here for slaughter, so they are representative of the region. Fig. 1 Map of the state of Jalisco, Mexico, indicating the three municipalities (Arandas, San Miguel el Alto, and

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Analysis of absolute nuclear DNA content reveals a small genome and intra-specific variation in Cashew (Anacardium occidentale L.), Anacardiaceae

: targets, trends and tomorrow. Annals of Botany, 107: 467-590. BENNETT, M. D. and I. J. LEITCH (2012): Plant DNA C-values Database. http://data.kew.org/cvalues BENNETT, M. D., I. J. LEITCH, H. J. PRICE and J. S. JOHNSTON (2003): Comparison with Caenorhabditis (~100 Mb) and Drosophila (~175 Mb) using flow cytometry show genome size in Arabidopsis to be ~157 Mb and thus ~25% larger than the Arabidopsis Genome Initiative estimate of ~125 Mb. Annals of Botany, 91: 1-11. BENNETZEN, J. L. and E. A. KELLOGG (1997): Do plants have

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How small and constrained is the genome size of angiosperm woody species

. KNIGHT (2008): Genome size is a strong predictor of cell size and stomatal density in angiosperms New Phytologist 179: 975-986. BEAULIEU, J. M., S. A. SMITH and I. J. LEITCH (2010): On the tempo of genome size evolution in angiosperms. J. Bot. doi: 10.1155/2010/989152. BECK, S. L., R.W. DUNLOP and A. FOSSEY (2003): Evaluation of induced polyploidy in Acacia mearnsii through stomatal counts and guard cell measurements. South African Journal of Botany 69: 563-567. BEDI, Y. S., S. S. BIR and B. S. GILL (1981): Cytopalynology

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‘Cell cycle’ and ‘cell death’- related genes are differentially expressed during long – term in vitro real-time cultivation of porcine oviductal epithelial cells

that make up the “cell cycle” group in our research showed stronger or weaker links with mitosis, meiosis or intracellular organization processes. The first, PTTG1 ( pituitary tumor – transforming 1 ) plays an important role in mitosis, cellular transformation, DNA repair and transcription regulation [ 27 ]. In studies on porcine oocytes and early stages of porcine embryos, it has been shown that this gene may have an important connection with the process of maternal-to-embryonic transition (MET) [ 28 ]. During this process, the germ genome is activated

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HDL cholesterol is associated with pbmc expression of genes involved in HDL metabolism and atherogenesis

integrin and endothelial cell adhesion molecules by HDL ( 6 , 37 ). Overall, our data on the negative correlation between HDL-C and pro-inflammatory gene transcripts suggest the decay of atherogenesis-related inflammation with the increase of HDL-C. Besides, PBMC expression of atherogenesis-sensitive genes is suggested to be controlled only by HDL-C level, due to the lack of any association with LDL-C and plasma TG. Both conclusions are the major novelties of our study. The limitation of our study is the expression profiling of only two gene clusters; the genome

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Genes encoding proteins regulating fatty acid metabolism and cellular response to lipids are differentially expressed in porcine luminal epithelium during long-term culture

acid stimulates interleukin-8 via the TLR4/NF-κB/ROS pathway and induces mitochondrial dysfunction in bovine oviduct epithelial cells Am J Reprod Immunol 2017 77 1 10 10.1111/aji.12642 7 Huang DW, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA. The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists. Genome Biol. 2007;8:R183; DOI:10.1186/gb-2007-8-9-r183. 10.1186/gb-2007-8-9-r183 Huang DW Sherman BT Tan Q Collins JR

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The genes regulating maintenance of cellular protein location are differentially expressed in porcine epithelial oviductal cells during longterm in vitro cultivation

Southern LL Thompson DL Wood TC Early Embryonic Development in Vitro by Coculture with Oviductal Epithelial Cells in Pigs1 Biol Reprod 1989 41 425 30 10.1095/biolreprod41.3.425 4 Huang DW, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA. The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists. Genome Biol. 2007;8:R183; DOI:10.1186/gb-2007-8-9-r183. 10.1186/gb-2007-8-9-r183 Huang DW Sherman BT Tan Q Collins JR

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Genes regulating biochemical pathways of oxygen metabolism in porcine oviductal epithelial cells during long-term IVC

10.1186/s13048-016-0243-x 14 Li S, Winuthayanon W. Oviduct: roles in fertilization and early embryo development. J Endocrinol. 2017;232:R1–26; DOI:10.1530/JOE-16-0302. 27875265 10.1530/JOE-16-0302 Li S Winuthayanon W Oviduct: roles in fertilization and early embryo development J Endocrinol 2017 232 R1 26 10.1530/JOE-16-0302 15 Ferraz MAMM, Rho HS, Hemerich D, Henning HHW, van Tol HTA, Hölker M, Besenfelder U, Mokry M, Vos PLAM, Stout TAE, Le Gac S, Gadella BM. An oviduct-on-a-chip provides an enhanced in vitro environment for zygote genome

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