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Alexander Bolshoy

occurrence of words. Journal of Biomolecular Structure and Dynamics , 6, 1013–1026. [4] Bolshoy, A., Volkovich, Z., Kirzhner, V., et al., 2010. Genome clustering: From linguistics models to classification of genetic texts , Studies in Computational Intelligence, Berlin: Springer-Verlag. [5] Trifonov, E.N., 1989. The multiple codes of nucleotide sequences. Bulletin of Mathematical Biology , 51, 417–432. [6] Pevzner, P., 2000. Computational molecular biology: An algorithmic approach . Cambridge, MA: MIT Press. [7] Brazma, A., Jonassen, I

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Hana Owsianková, Dan Faltýnek and Ondřej Kučera

and Cybernetics , 1 (1–4), 43–52. [19] Bolshoy, A., Volkovich, Z., Kirzhner, V., et al., 2010. Genome clustering from linguistic models to classification of genetic texts . Berlin: Springer. [21] Lovato, P., 2015. Bag of words approaches for Bioinformatics . Ph.D. thesis, Dept. of Computer Science, University of Verona, series TD-03-15. [23] Harris, Z., 1954. Distributional structure. Word , 10 (2/3), 146–62. [25] Huang, C. H., Sun, R., Hu, Y., et al., 2016. Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested