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International Agrophysics

The Journal of Institute of Agrophysics of Polish Academy of Sciences

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Denis Loustau, Nuria Altimir, Mireille Barbaste, Bert Gielen, Sara Marańón Jiménez, Katja Klumpp, Sune Linder, Giorgio Matteucci, Lutz Merbold, Marteen Op de Beek, Patrice Soulé, Anne Thimonier, Caroline Vincke and Peter Waldner

Abstract

The nutritional status of plant canopies in terms of nutrients (C, N, P, K, Ca, Mg, Mn, Fe, Cu, Zn) exerts a strong influence on the carbon cycle and energy balance of terrestrial ecosystems. Therefore, in order to account for the spatial and temporal variations in nutritional status of the plant species composing the canopy, we detail the methodology applied to achieve consistent time-series of leaf mass to area ratio and nutrient content of the foliage within the footprint of the Integrated Carbon Observation System Ecosystem stations. The guidelines and defi-nitions apply to most terrestrial ecosystems.

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Erel Lior, Tim Axelrod, Evgeni Eltzov, Ariel Kushmaro and Robert S. Marks

Abstract

The Lachish River has suffered from recurring pollution incidents for the past decade. On October 11th, 2017, another contamination in the river was sighted, as thousands of dead fish were found floating. Samples from the river were retrieved and tested through a whole cell bioluminescent bacterial bioreporter system as well as conventional analytical methods, and the results from both methods were analyzed and compared, even though initially these two collecting events were not coordinated. The information acquired from the whole cell reporter was consistent with that obtained from conventional methods. Both approaches indicated a large concentration of microorganisms as deduced from K802NR E. coli strain reaction and coliforms count. The high water conductivity measured in collected samples were closer downstream, and attributed to the diffusion of salts from the Mediterranean Sea which affected bacterial viability as seen from the decreased reaction of E. coli strains TV1061 and DPD2794. In addition, the bacterial indicators’ kinetic patterns have shown indication for the presence of a genotoxic substance from only one of the collection sites, which was tested positive for the herbicide Metazachlor, itself known to have genotoxic effects. The correlation between both approaches, along with the biosensor’s ability to assess biological influences, suggests that the whole cell bioluminescent bacterial bioreporter bioassay as an easy, simple and efficient approach for water toxicity monitoring.

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Alina Syp, Antoni Faber and Małgorzata Kozak

Abstract

The aim of this study was to compare four tools for calculation of nitrous oxide (N2O) emissions under the renewable energy directive. All the tools follow the methodology of the international panel on climate change. The first calculations of N2O fluxes were based on the Tier 1 method using the BioGrace tool. The second and the third ones followed the Tier 2 methodology, applying the global nitrous oxide calculator and the Lesschen emission factors, respectively. The last assessment was performed in accordance with the Tier 3 approach by using the denitrification- decomposition model. The N2O fluxes were calculated for rapeseed cultivation in a 4-year crop rotation in Poland. The same input data were applied in all methods. The average of N2O emissions varied in the range of 1.99-3.78 kg N2O ha-1 y-1, depending on the approach used (Lesschen emission factors > denitrificationdecomposition > global nitrous oxide calculator > BioGrace). This paper illustrates that, at country level, the Lesschen emission factors method worked as well as the denitrification-decomposition model for Poland. The advantage of this approach is the simplicity of collecting the necessary data, in contrast to process-based modelling. Moreover, the Tier 2 method provides mitigation measures similar to the denitrification-decomposition model, related to crop type, climatic conditions, and management practices.

Open access

Bert Gielen, Manuel Acosta, Nuria Altimir, Nina Buchmann, Alessandro Cescatti, Eric Ceschia, Stefan Fleck, Lukas Hörtnagl, Katja Klumpp, Pasi Kolari, Annalea Lohila, Denis Loustau, Sara Marańon-Jimenez, Tanguy Manise, Giorgio Matteucci, Lutz Merbold, Christine Metzger, Christine Moureaux, Leonardo Montagnani, Mats B. Nilsson, Bruce Osborne, Dario Papale, Marian Pavelka, Matthew Saunders, Guillaume Simioni, Kamel Soudani, Oliver Sonnentag, Tiphaine Tallec, Eeva-Stiina Tuittila, Matthias Peichl, Radek Pokorny, Caroline Vincke and Georg Wohlfahrt

Abstract

The Integrated Carbon Observation System is a Pan-European distributed research infrastructure that has as its main goal to monitor the greenhouse gas balance of Europe. The ecosystem component of Integrated Carbon Observation System consists of a multitude of stations where the net greenhouse gas exchange is monitored continuously by eddy covariance measurements while, in addition many other measurements are carried out that are a key to an understanding of the greenhouse gas balance. Amongst them are the continuous meteorological measurements and a set of non-continuous measurements related to vegetation. The latter include Green Area Index, aboveground biomass and litter biomass. The standardized methodology that is used at the Integrated Carbon Observation System ecosystem stations to monitor these vegetation related variables differs between the ecosystem types that are represented within the network, whereby in this paper we focus on forests, grasslands, croplands and mires. For each of the variables and ecosystems a spatial and temporal sampling design was developed so that the variables can be monitored in a consistent way within the ICOS network. The standardisation of the methodology to collect Green Area Index, above ground biomass and litter biomass and the methods to evaluate the quality of the collected data ensures that all stations within the ICOS ecosystem network produce data sets with small and similar errors, which allows for inter-comparison comparisons across the Integrated Carbon Observation System ecosystem network.

Open access

Daniela Franz, Manuel Acosta, Núria Altimir, Nicola Arriga, Dominique Arrouays, Marc Aubinet, Mika Aurela, Edward Ayres, Ana López-Ballesteros, Mireille Barbaste, Daniel Berveiller, Sébastien Biraud, Hakima Boukir, Timothy Brown, Christian Brümmer, Nina Buchmann, George Burba, Arnaud Carrara, Allessandro Cescatti, Eric Ceschia, Robert Clement, Edoardo Cremonese, Patrick Crill, Eva Darenova, Sigrid Dengel, Petra D’Odorico, Gianluca Filippa, Stefan Fleck, Gerardo Fratini, Roland Fuß, Bert Gielen, Sébastien Gogo, John Grace, Alexander Graf, Achim Grelle, Patrick Gross, Thomas Grünwald, Sami Haapanala, Markus Hehn, Bernard Heinesch, Jouni Heiskanen, Mathias Herbst, Christine Herschlein, Lukas Hörtnagl, Koen Hufkens, Andreas Ibrom, Claudy Jolivet, Lilian Joly, Michael Jones, Ralf Kiese, Leif Klemedtsson, Natascha Kljun, Katja Klumpp, Pasi Kolari, Olaf Kolle, Andrew Kowalski, Werner Kutsch, Tuomas Laurila, Anne de Ligne, Sune Linder, Anders Lindroth, Annalea Lohila, Bernhard Longdoz, Ivan Mammarella, Tanguy Manise, Sara Maraňón Jiménez, Giorgio Matteucci, Matthias Mauder, Philip Meier, Lutz Merbold, Simone Mereu, Stefan Metzger, Mirco Migliavacca, Meelis Mölder, Leonardo Montagnani, Christine Moureaux, David Nelson, Eiko Nemitz, Giacomo Nicolini, Mats B. Nilsson, Maarten Op de Beeck, Bruce Osborne, Mikaell Ottosson Löfvenius, Marian Pavelka, Matthias Peichl, Olli Peltola, Mari Pihlatie, Andrea Pitacco, Radek Pokorný, Jukka Pumpanen, Céline Ratié, Corinna Rebmann, Marilyn Roland, Simone Sabbatini, Nicolas P.A. Saby, Matthew Saunders, Hans Peter Schmid, Marion Schrumpf, Pavel Sedlák, Penelope Serrano Ortiz, Lukas Siebicke, Ladislav Šigut, Hanna Silvennoinen, Guillaume Simioni, Ute Skiba, Oliver Sonnentag, Kamel Soudani, Patrice Soulé, Rainer Steinbrecher, Tiphaine Tallec, Anne Thimonier, Eeva-Stiina Tuittila, Juha-Pekka Tuovinen, Patrik Vestin, Gaëlle Vincent, Caroline Vincke, Domenico Vitale, Peter Waldner, Per Weslien, Lisa Wingate, Georg Wohlfahrt, Mark Zahniser and Timo Vesala

rotation in northern France. Plant Soil, 343, 1/2, 109-137, doi:10.1007/s11104-011-0751-9. Loustau D., Altimir N., Barbaste M., et al., 2018. Sampling and collecting foliage elements for the determination of foliar nutrients in ICOS ecosystem stations. Int. Agrophys., 32, 665-676. Marcolla B., Cescatti A., Manca G., et al., 2011. Climatic controls and ecosystem responses drive the inter-annual variability of the net ecosystem exchange of an alpine meadow. Agr. Forest Meteorol., 151(9), 1223-1243, doi:10.1016/j.agrformet.2011.04.015. Migliavacca M