Characterization of vine varieties by SSR markers

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Abstract

Nowadays, there are well known PCR-based techniques to detect polymorphism in plants. Marker technologies which are applied in breeding and varietal characterization can be exchanged across laboratories with standardization to yield reproducible results. This article describes applying of simple sequence repeats (SSR) markers in European laboratories, in which the reproducibility of these popular markers are examined. One of the European Union interests is characterization of grape varieties and preparation of International Vitis catalogue for comparison global varieties as Chardonnay, Sauvignon, Pinot noir with the domestic for each other country. Grape genome contains of many SSR, which are highly polymorphic. This review provides the latest information in SSR research including novels in research, comparison, development and application of microsatellites.

Adam-Blondon AF, Roux C, Claux D, Butterlin G, Merdinoglu D, This P (2004): Theor. Appl. Genet. 109: 1017-1027.

Aranzana MJ, Pineda A, Cosson P, Dirlewanger E, Ascasibar J, Cipriani G, Ryder CD, Testolin R, Abbott A, King GJ, Iezzoni AF, Arus P (2003): Theor. Appl. Genet. 106: 819-825.

Bowers JE, Dangl GS, Meredith CP (1999): J. Enol. Vitic. 50: 243-246.

Bowers JE, Meredith CP (1997): Nat. Genet., 16: 84-87.

Carlier JD, Sousa NH, Santo TE, d’Eeckenbrugge GC, Leitao JM (2010): Mol. Breeding 29: 139-155.

Cipriani G, Spadotto A, Jurman I, Gaspero G, Crespan M, Meneghetti S, Frare E, Vignani R, Cresti M, Morgante M, Pezzotti M, Pe E, Policriti A, Testolin R (2010): Theor. Appl. Genet. 121: 1569-1585.

Doulati-Baneh H, Mohammadi SA, Mahmoudzadeh H, Mattia F, Labra M (2009): S. Afr. J. Enol. Vitic. 30: 38-42.

Eujayl I, Sorrells ME, Baum M, Wolters P, Powell W (2002): Theor. Appl. Genet. 104: 399-407.

Fan-Juan M, Xiang-yang X, Feng-lan H, Jing-fu L (2010): Agric. Sci. China 9: 1430-1437.

Cheng Z, Huang H (2009): Sci. Hortic. 120: 188-193.

Gheţea LG, Moto RM, Popescu CF, Barbacar N, Iancu D, Constantinescu D, Barbarii LE (2010): Rom. Biotechnol. Lett. 15: 116-124.

Giannetto S, Velasco R, Troggio M, Malacarne G, Storchi P, Cancellier S, Nardi BD, Crespan M (2008): Plant Sci. 175: 402-409.

Gupta PK, Rustgi S, Sharma S, Singh R, Kumar N, Balyan HS (2003): Mol. Gen. Genomics 270: 315-323.

Huelsenbeck JP, Ronquist F (2001): Appl. notes 17: 754-755.

Jahnke G, Majer J, Varga P, Szȍke B (2011): Sci. Hortic. 129: 32-37.

Jahnke G, Majer J, Lakatos A, Molnar JG, Deak E, Stefanovits-Banyai E, Varga P (2009): Sci. Hortic. 120: 213-221.

Jahnke G, Korbuly J, Majer J, Gyorffyne-Molnar J (2007): Sci. Hortic. 114: 71-73.

Jiang L, Ke-cheng Y, Guang-tang P, Ting-zhao R (2008): Agric. Sci. China 7: 1037-1045.

Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sala F, Wiel C, Bredemeijer G, Vosman B, Matthes M, Daly A, Brettschneider R, Bettini P, Buiatti M, Maestri E, Malcevschi A, Marmiroli N, Aert R, Volckaert G, Rueda J. Linacero R, Vazquez A, Karp A (1997): Mol. Breeding 3: 381-390.

Kozjak P, Koros Z, Koruza EC, Javornik B (2003): Vitis 42: 83-86.

Lamia K, Hedia B, Jean-Marc J, Neila TF (2010) Sci. Hortic. 127: 54-63.

Laucou V, Lacombe T, Dechesne F, Siret R, Bruno JP, Dessup M, Dessup T, Ortigosa P, Parra P, Roux C, Santoni S, Vare D, Peros JP, Boursiquot JP, This P (2011): Theor. Appl. Genet. 122: 1233-1245.

Lopes MS, Santos MR, Eiras-Dias JE, Mendonc D, Machado A (2006): J. Biotech. 127: 34-44.

Li-Xia W, Xu-Zhen C, Su-Hua W, Chang-You L, Hui L (2009): Acta Agron. Sin. 35: 816-820.

Ma QH, Wang GX, Liang LS (2011): Sci. Hortic. 129: 597-602.

Maghuly F, Borroto E, Ruthner F S, Pedryc A, Laimer M (2005): Tree Genet. Genom. 1: 151-165.

Martinez LE, Cavagnaro PF, Masuelli RW, Zuniga M (2006): Plant Sci. 170: 1036-1044.

McCouch SR, Teytelman L, Xu Y, Katarzyna B, Clare K, Walton M, Fu B, Maghirang R, Zhikang L, Xing Y, Zhang Q, Kono I, Yano M, Robert F,Genevieve D, Schneider D, Cartinhour S, Ware D, Stein L (2002): DNA Res. 9: 257-279.

Meng F, Xu X, Huang F, Li J (2010): Sci. Direct 9: (10)1430-1437. Moreno-Sanz P, Loureiro MD, Suarez B (2011): Sci. Hortic. 129: 433-440.

Nicerweb (2011) http://www.nicerweb.com/bio3400/Locked/media/ch22/RFLP-pedigree.html 16.12.2011.

Oliveira AC, Garcia AN, Cristofani M, Machado MA (2002): Euphytica 128: 397-403.

Riaz S, Tenscher AC, Smith BP, Ng DA, Walker MA (2008): J. Amer. Soc. Horc. 133: 559-568.

Riaz S, Dangl GS, Edwards KJ, Meredith CP (2004): Theor. Appl. Genet. 108: 864-872.

Schneider A, Carra A, Akkak A, This P, Laucou V, Botta R (2011): Vitis 40: (4)197-203.

Sefc KM, Regner F, Turetschek E, Glossl J, Steinkellner H (1999): Genome 42: 367-373.

Sefc KM, Lopes MS, Lefort F, Botta R, Roubelakis-Angelakis KA, Ibanes J, Pejic I, Wagner HW, Glossl J, Steinkellner H (2000): Theor. Appl. Genet., 100: 498-505.

Sefc KM, Lefort F, Grando MS, Scott KD, Steinkellner H, Thomas MR (2001): Mol. Biol. Biotech. Grapevine 17: 434-460.

Shimodaira, J (2002): Syst. Biol. 51: (3)492-508.

Song QJ, Shi J R, Singh S, Fickus EW, Costa JM, Lewis J, Gill BS, Ward R, Cregan PB (2005): Theor. Appl. Genet. 110: 550-560.

Thiel T, Michalek W, Varshney RK, Graner A (2003): Theor. Appl. Genet. 106: 411-422.

This P, Jung A, Boccacci P (2004): Theor. Appl. Genet. 109: 1448-1458.

Technologijahrane (2011) http://www.google.sk/imgr es?q=rapd&um=1&hl=sk&sa=N&biw=1920&bih=971 &tbm=isch&tbnid=2wwu28kFl0aqlM:&imgrefurl=ht tp://www.tehnologijahrane.com/hemijahrane/pcrzasnovani- markeri&docid=PDuiV_9LxuqmzM&img url=http://www.tehnologijahrane.com/wp-content/ uploads/2009/06/umnozavanje-rapd-tehnikom.jpg& w=858&h=668&ei=UPHdTtyAPcbfsgasg4ySCQ&zoo m=1&iact=rc&dur=582&sig=113483999905443614957 &page=1&tbnh=127&tbnw=167&start=0&ndsp=67&ve d=1t:429,r:9,s:0&tx=90&ty=39n 16.12.2011.

Tessier C, David J, This P, Boursiquot JM, Charrier A (1999): Theor. Appl. Genet. 98: 171-177.

Thomas MR, Scott NS, Botta R, Kijas MH (1998): J. Japan. Soc. Hortic. Sci. 67: 1189-1192.

Troggio M, Malacarne G, Coppola G, Segala C, Cartwright DA, Pindo M, Stefanini M, Mank R, Moroldo M, Morgante M, Grando MS, Velasco R (2007): Genetics 176: 2637-2650.

Ulanovsky S, Gogorcen Y, Martiney De Toda, F., Ortiz, JM (2002): Sci. Hortic. 92: 241-254.

Upadhyay A, Saboji MD, Reddy S, Deokar K, Karibasappa GS (2007): Sci. Hortic. 112: 176-183.

Varshney R K, Sigmunda R, Borner A, Korzunb V, Steina N, Sorrells ME, Langridged P, Graner A (2005): Plant Sci. 168: 195-202.

Vezzulli S, Troggio M, Coppola G, Jermakow A, Cartwright D, Zharkikh A, Stefanini M, Grando MS, Viola R, Adam-Blondo AF (2008): Theor. Appl. Genet. (doi:10.1007/s00122-008-0794-3).

Vignani R, Bowers JE, Meredith CP (1996): Sci. Hortic. 65: 163-169.

Wunsch A: (2009): Sci. Hortic. 120: 348-352.

Xie R, Li X, Chai M, Songa L, Jiaa H, Wub D, Chenb M, Chen K, Aranzanac MJ, Gaoa Z (2010): Sci. Hortic. 125: 622-629.

Ya-Ming G, Sheng-chun X, Wei-hua M, Ze-yun L, Qi-zan H, Gu-wen Z, Ju D (2011): Agric. Sci. 10: 838-844.

Zhang L, Li Z, Wang Y, Jiang Z, Wang S, Huang H (2010): Euphytica 175: 133-143.

Acta Chimica Slovaca

The Journal of Slovak University of Technology in Bratislava

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